YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13633, orf...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSPIEKAA SGALASAIAN TLVYPLDLSK VLIQTQVKKN KPKSGSNGIP TPPSESDLED  60
   61 SVYKQKVDED NGLKYKNTID VLTQIYKKKG ILGWYHGLFS TVVGTAAQNF SYFYWYTIVK 120
  121 RVYANLYKHI PNHKPGTFTE LFLGALAAAI SQCFTMPIGV ITTQQQTDKS HKNLFQLIQD 180
  181 ILDQDGISGL WRGLRVSMVL CINPSITYGS YERLKQVLYG DKQFLKPLES FSLGVLAKSL 240
  241 ATIATQPLIV SKAMIQKKSS PKKNNKATDK NTEEDDEEDI KFDHFTDALA YLWRTEKFRG 300
  301 LYKGIAPQLL KGVFVQGLLF TFKDQLDILF LFLLSLIKNR SVLKK

Type	Start	End	Confidence
Cytoplasmic	1	91	0.51
Transmembrane Helix	92	110	0.49
Non-Cytoplasmic	111	345	0.57