YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SEC31_CANAL
Protein type: Globular with Signal Peptide
Type Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKISEIART STFAWSSKNL PLLAAGTVAG AVDINFSSSA TLELWDIFSP TNKTEPIFSA  60
   61 TVDNRFYALA WSKPFEGRPQ GLLAGAFENG TVEFWDADVL IKTKDLAKAS VHKSNKHTGA 120
  121 VKSLQFNPIQ NHVLVTGGSN GQIFIWDTKT FSEPFAPGQA MTPMDEITFV SWNNSVSHIL 180
  181 ASTGNGGYTS IWDLKTKREV LHLSYTGAGG RANFSYVSWH PSQSTKLITA SDNDSCPLIL 240
  241 TWDLRNSNAP EKILEGHKKG VLSLDWCKQD PTLLLSSGKD NSTFLWNPIE GIKLGEYPTT 300
  301 ANWAFETKFA PAAPDIFATA SFDGKVVVQT IQDTSPSVST KVASTDDNEF WSELSTTETQ 360
  361 QPVFEVKQAP NWLKNPSNVS FGFGSKLVII NTDSSGKSTV KVDKFVAKGQ EKTEKLFKDL 420
  421 KNDNYSSLIQ DKLEGETVNE NNKSDWEVLK RLSETGKESL FEDANNDEKE ATSPETKKEN 480
  481 GEDDFFEHLG NGETAKKEEV FVPEGNFKIF TNNENEDSKK LINLILRNKT EEAVSSCLEQ 540
  541 KKLVEALVLA LDGSDDVKQQ VKNAYFKKNK ENNLSRVIYN ASTKNVTDLV AHANVENWKE 600
  601 VAVGISSFTT DSSEYNSKMS ELGDRILKAK DGKRNDAVVC YLAGGALDKI SNLWLQELPD 660
  661 YESELLSLKS EEITSPSDAR LQALTNFVEK VATYRYITKS TGEFSGPMVE PLAKAILEFV 720
  721 NLVAGSGDFD LANKFLQLLP SEFSGTEKER ILKATSKAVE PASAVKSSAN AKIAKPASSS 780
  781 GQTRASINAV PAPAYAPPVQ APPVQAPQPP LVQQQQQQQQ QQQPNRYGYA QPTYAGAAPK 840
  841 TNPYARTNPY APSNNIYKPA SPVATPSSLS GTTSGVPPPP PKASYKHETE GWNDLPDTFK 900
  901 AKTAAPRRAA AAATPPVSTP TPVSAPAFGS PGQPPSAPSQ PGSVGSVSSA GYPKKTFSAT 960
  961 NVLPPPPKSI SRSTSRTTVP TSSTVPASPK PTPVSNKYAP AVTSDASQPP SSGFASPTLN1020
 1021 SSPRLAKNPY APSVTEQLPP KISYATPPAH HLANNGPSTP SYAPPKNPYA VPPSTSVSHA1080
 1081 GIAPPPPAPK LGSAAPPPPQ PFGSSMSMPV QPAFNGVPPP PPPVGRAVST PAAAKIEQPP1140
 1141 AREPELPVQS KHPKGDRTHI PENSLPIYNS LTNVLEAIKP NIPEKYAKHG TDMEQRLNIL1200
 1201 FDHLNNEEIS NGVIELLLKV ATSLESKDFA NATAVNLQIA TEHSDEIGNW HTGLKRLITM1260
 1261 AEAMY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle