YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7490
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.98
Transmembrane Helix	72	92	0.88
Non-Cytoplasmic	93	106	0.77
Transmembrane Helix	107	126	0.92
Cytoplasmic	127	132	0.89
Transmembrane Helix	133	154	0.92
Non-Cytoplasmic	155	159	0.86
Transmembrane Helix	160	181	0.91
Cytoplasmic	182	194	0.77
Transmembrane Helix	195	217	0.90
Non-Cytoplasmic	218	228	0.86
Transmembrane Helix	229	248	0.96
Cytoplasmic	249	330	0.96
Transmembrane Helix	331	354	0.90
Non-Cytoplasmic	355	371	0.83
Transmembrane Helix	372	393	0.87
Cytoplasmic	394	399	0.78
Transmembrane Helix	400	420	0.93
Non-Cytoplasmic	421	426	0.78
Transmembrane Helix	427	451	0.88
Cytoplasmic	452	464	0.82
Transmembrane Helix	465	487	0.92
Non-Cytoplasmic	488	496	0.80
Transmembrane Helix	497	517	0.94
Cytoplasmic	518	529	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDNDNQDL ESITIKPPTS QETTTSSSSG STVVVPPLQT PQFQNVKHEI EYEGEILTID  60
   61 STNWRNSRLL KLQILVSFAV FILFGLAEQT VGTIIPKLQH DYAINDIQIS FIFFCSVSGY 120
  121 LLTAMINSIT HEYLGIRGVT VLGSTSMALS YLIVSHKPPF VIFLMCYFMS GVGFGTLDAS 180
  181 INTWMGNLVD SNQLLGIVHG CYGIGSLISP SLISYLLSKS NHPWKWQNYY VILSVVAGFC 240
  241 LVSLILTFKY ETPKKYKYIS ELRHQQQKEQ GQTQKDGSIE LEHFTGIHGS TTKDSFDLEA 300
  301 TVEDNQEDGE EEEDDDDHHS TSVRKTLSST LVWSFALILF IYVGGEAVFA AWLVTFLLRI 360
  361 KNLDYKTASY MATTFWSGVT IGRIGLGFVT AHFFSSELWA NLIYILVSFL GCLLFWILTF 420
  421 IETSTLLVIV LFLVVLVTGV AIGPIFPTTI VSSVNILPAK YQTSGIGFIC AFGGGGGAGI 480
  481 PFLIGLLAES SEVGLRTYPL IISLMFGILL GVWILVMQKY SSKYKRNTL