YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10037, orf...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	166	0.98
Transmembrane Helix	167	189	0.77
Cytoplasmic	190	199	0.65
Transmembrane Helix	200	220	0.65
Non-Cytoplasmic	221	328	0.90
Transmembrane Helix	329	351	0.89
Cytoplasmic	352	374	0.89
Transmembrane Helix	375	394	0.91
Non-Cytoplasmic	395	402	0.81
Transmembrane Helix	403	425	0.93
Cytoplasmic	426	465	0.94
Transmembrane Helix	466	485	0.89
Non-Cytoplasmic	486	491	0.80
Transmembrane Helix	492	511	0.90
Cytoplasmic	512	520	0.78
Transmembrane Helix	521	541	0.92
Non-Cytoplasmic	542	557	0.76
Transmembrane Helix	558	581	0.91
Cytoplasmic	582	808	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSVFFSIL TLLLSCFVST TEARRKLSAT SLVTCMDNSQ ISPSYFNVTF NPDDRSLRYA  60
   61 LDLTTSISAY ITAHVQVYAY GFLIIEKDIN VCSLGWKQFC PIFPGALQID SVQYISSEYT 120
  121 KQIPGIAYQV PDIDAVVKLV VKERDSGDTL SCLQANFSNG KTISQTGVKW ATACIAGLGL 180
  181 IVAAMLSTFG NSNAASHISA NSLSLFLYFQ SVVVVSMQAV ERVPPIASAW SENLAWSMGL 240
  241 IRIQFMQNIF RWYIQSTGGS PTTYFISSTK QVLVQKHKRS LDYVAGVAKR SLEYALRSHS 300
  301 NLYVLRGIKR IGYNSKIEPT SIVATGYTWF VLIGYLLVVL LVLVKSVIIL LTRAKKINPR 360
  361 TFNSFRGSFP NLIKGSLLRY IAIGSTQLII FSLWEFTQND SPAMVVLAVL FVLLLLGVLG 420
  421 WSYFNVMKIG RQSIRTYNNP AALLYGDNKV LQKWGFCYTM FHANKYWFGV VLMGYNVFKA 480
  481 LFIAFCQDAG KVSVLPIFVA DLAYTIYLIW TGPYLNKPTN VINYMMSIVT TINSFLFLFF 540
  541 SDLFGQPAPV ASIMGWVFFI LNAAFSLILL ILVIVFVLLS VMSKNPDARF APAKDDRFSF 600
  601 QRKSSIKHKS LTEKTGFSNT NGGHGGVGGG DEELTALGVA AQDHSADWES QMYKLNDLSL 660
  661 DEEDDSRTNQ DFVRPDKTRE LTSDYDDDTS FTNEDNTRVV NNEEDKNKKL AEKWKSKISR 720
  721 KLSKKKSLKD KNNNTTTTTN NNITTVRRLS DTLLNDERDS NEKREENDEL SPITHPYNQS 780
  781 TSFNNHKREH STTSTISNNN PPHTKGFI