YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHS7_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFGSFDHIC NKTALPLCSV VGAVNQSAFF QRGIVPDCYA RSVELANTMI FQIGNAFVHF  60
   61 GGLIILLIII FNVRAKYTAI GRKEMLFFLY LAIGLIVSSL IVDCGVSPPS STSYAYFVAV 120
  121 QIGLSSALCI CLLYNGFLCF QFWEDGTSRS MWILRVGCFA WFAVNFIVCI ITFKHWDTAL 180
  181 DYRKTTTLFI FAYVLNAVIL AVYVVSQIIL VVFALESYWS LGAILLGVFF FVAGQVLTYV 240
  241 FSDKICRGAS HYVDGLFFGS ACNVFTFMMI YKFWDMITSD DLEFSVANVE QPINEFGVGA 300
  301 DDEKRSSMFF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.64
Transmembrane Helix	9	30	0.50
Non-Cytoplasmic	31	52	0.80
Transmembrane Helix	53	73	0.89
Cytoplasmic	74	85	0.76
Transmembrane Helix	86	106	0.94
Non-Cytoplasmic	107	116	0.69
Transmembrane Helix	117	138	0.91
Cytoplasmic	139	151	0.74
Transmembrane Helix	152	173	0.93
Non-Cytoplasmic	174	188	0.73
Transmembrane Helix	189	211	0.90
Cytoplasmic	212	217	0.68
Transmembrane Helix	218	241	0.87
Non-Cytoplasmic	242	250	0.75
Transmembrane Helix	251	271	0.87
Cytoplasmic	272	310	0.83