YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2479
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.98
Transmembrane Helix	63	84	0.90
Non-Cytoplasmic	85	94	0.73
Transmembrane Helix	95	128	0.72
Cytoplasmic	129	144	0.88
Transmembrane Helix	145	166	0.86
Non-Cytoplasmic	167	184	0.77
Transmembrane Helix	185	205	0.91
Cytoplasmic	206	213	0.79
Transmembrane Helix	214	234	0.92
Non-Cytoplasmic	235	256	0.91
Transmembrane Helix	257	280	0.83
Cytoplasmic	281	294	0.84
Transmembrane Helix	295	319	0.88
Non-Cytoplasmic	320	349	0.96
Transmembrane Helix	350	372	0.89
Cytoplasmic	373	399	0.90
Transmembrane Helix	400	422	0.91
Non-Cytoplasmic	423	428	0.67
Transmembrane Helix	429	450	0.84
Cytoplasmic	451	469	0.75
Transmembrane Helix	470	490	0.87
Non-Cytoplasmic	491	497	0.84
Transmembrane Helix	498	520	0.88
Cytoplasmic	521	557	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIHTVLSQ EELVEQVKSH KEYYNNTQNV EGRRIDPNLA SNDVEMLGQL GYKQELKRHF  60
   61 STFQCFGVAF SIMGLLPSIA SIFSQGIVAG PAGFLWGWVI SSLLILTIGV AMSISGSSIS 120
  121 TSGGLYYWTN YYAPPRVKTV LSYLIGNTNS IALVGSFCSV VYGFAIQVYA IVVIARDGDF 180
  181 EVTQAKLYGV FVACVIAEVA VTCLSSKNCA HLQTVSVVCN VFIIIVYILA MLVGSRGKFK 240
  241 PASYVFGEFE NLSDWPIGWT QISAAWLPAI WTIGAFDSVI HQSEEVHNAG RVIPIGILGS 300
  301 ISACGTLGTI IIIVTLFCIQ TDDIEGHILG SKFGQPMAQI IYDVLGKKWA LFFMTFMSIC 360
  361 QFLMGSSILT AISRQIWAFS RDNGLPFSFW IKRVNKNLST PINAVIFGGI CSVIMGLLVL 420
  421 IGTVAANALF SLYIAGNYLA WSTPTLLRLT SGRKLFVPGK FYLGKVFSPL IEWISVIFGF 480
  481 YTIVMVMLPA SSHVDKDTMN YTCVITPAVI ILSYIYYMLY SRKHYHGPCK TIDVEDECEI 540
  541 LDGIEHQHID AELSEKS