YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10808, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	634	0.62
Transmembrane Helix	635	654	0.90
Cytoplasmic	655	670	0.50
Transmembrane Helix	671	692	0.58
Non-Cytoplasmic	693	694	0.55
Transmembrane Helix	695	717	0.84
Cytoplasmic	718	798	0.77
Transmembrane Helix	799	817	0.55
Non-Cytoplasmic	818	824	0.44
Transmembrane Helix	825	851	0.87
Cytoplasmic	852	902	0.48
Transmembrane Helix	903	924	0.85
Non-Cytoplasmic	925	936	0.48
Transmembrane Helix	937	959	0.77
Cytoplasmic	960	972	0.53
Transmembrane Helix	973	995	0.83
Non-Cytoplasmic	996	1031	0.39
Transmembrane Helix	1032	1055	0.86
Cytoplasmic	1056	1066	0.42
Transmembrane Helix	1067	1086	0.67
Non-Cytoplasmic	1087	1111	0.59
Transmembrane Helix	1112	1134	0.88
Cytoplasmic	1135	1333	0.65
Transmembrane Helix	1334	1356	0.90
Non-Cytoplasmic	1357	1364	0.57
Transmembrane Helix	1365	1388	0.82
Cytoplasmic	1389	1460	0.53
Transmembrane Helix	1461	1483	0.89
Non-Cytoplasmic	1484	1577	0.72
Transmembrane Helix	1578	1598	0.94
Cytoplasmic	1599	1654	0.95
Transmembrane Helix	1655	1676	0.85
Non-Cytoplasmic	1677	1687	0.79
Transmembrane Helix	1688	1710	0.88
Cytoplasmic	1711	1717	0.86
Transmembrane Helix	1718	1739	0.91
Non-Cytoplasmic	1740	1745	0.84
Transmembrane Helix	1746	1764	0.87
Cytoplasmic	1765	1777	0.77
Transmembrane Helix	1778	1799	0.88
Non-Cytoplasmic	1800	1870	0.78
Transmembrane Helix	1871	1892	0.72
Cytoplasmic	1893	2254	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNSNTHSSR GRPGIIINPP TESNLNVHHI PEEEQASYDE DYDPNKTYIS DSQYWQRQSS  60
   61 SHHEDDLASI EIPELHQIQD RAPDSLSAHS DKRSSRSGRD ILNVLHLSRP SSPRSPHSST 120
  121 STPSLGHAIE DEDLDELKEG LNYALGTKEN EANWFPVNKL AKSSTHSREE NSGDENSSFV 180
  181 NYTTDIPLND LSPYISNTNT NTNKNKSDTS LKYLVNSPFE TRPNSSLHVD PGFLETGSLM 240
  241 SPYPKDGGGA SPRIANAISR ISDRIAGAGG NSRRNEESTD RLSAVESQTS LPLPTPMSEH 300
  301 FTFFDEYNKS SNKSDKTSIA NTSIRNDRDA YSDSNIDGLG LYLQQTNKSQ ISGTTQHEYS 360
  361 REVPVTDYLR LPKKSHQNNK TNYQEFDTMY LFGKSLGIFT PESKVRQFCY HVCENKFINT 420
  421 FLLIILILQV ALLTYRQWNP LVLNGYFVKG YNWADYLLMV INVIYTAEVI GKIIAYGFYD 480
  481 DHIMFDELGL PYPKNEITKE YFSKNYISKI LKSLGFFKSR VEKKRQEKFI SEDNDKRSSS 540
  541 EDSEIREIDL NDSRQDLLGE ANRSFSLKDK YQMDSHHRNY IPLRSQANDP DNLDETTPAP 600
  601 KQMLEAKNTF FKPAPHTFEK LNLKRAFFRS SWQRIDFISM VCFWISLFLS INHYDADHHI 660
  661 MLFRALSCLR ILRLCNLTTG TTTILTACKI AIPQLIDVSI FIACFWLFFG IIGVQTFKSS 720
  721 LTRHCVWTNP DDPSDTYVNS GSYCGSYIGL NGEPAAYLMR DGSSSNVIKG YRCPMYSQCI 780
  781 SGDNPYNGTL NFDNILQSLE IVFVIMSANT FTDIMYYTMD TDNMAACLFF IGCIFVMTVW 840
  841 LINVFIAIIV ASFNITRMEV AEEKKKKREG RRIFKIFGYA DQDVQMHEER LEFLKNQNVF 900
  901 LKWYYNLEFF FVICVIIDLF VQCFRRADMS DRRAHLLYRF EASFTGVFMV EIILRFAFYF 960
  961 PNWRLFFRVK RNCFDLFLAV ITTIIIIGPI KAALGHAYYW LTVFQVMRAY RVVLWTSITR1020
 1021 NLWLKIMGNF KAIFDLALFY FILLFLVSII LARYFEGVVT EDEAGDLDFP MTTLPGVFIA1080
 1081 LYVITSTENW TEILYGMQQY ATTTSSRSFG SIFLIGWFML SNMIILNIFI AVIAKTLEVS1140
 1141 EEAKRKQQLL QFIDTMTNKL QDIEQDSGLL SKIKKKLFRR KQVKDELEEA VVNLLLSGTA1200
 1201 VNDFLENDAR NEVDDEEEAI RTLPASTWKR WLGVNYWRTL NLFRNNPFYG NKAKGRKVSL1260
 1261 ENFNPANFAR TIVKERKNIV SKQNEFLEAN PRYNYVFYVI GPHHPLRRLC QKMVKPSYGE1320
 1321 RIDGVAPYKP VAEAMVVLMF IATVTLVVIA CYMTPIFRMD HAGEAWVFWA EFVFVMVFTV1380
 1381 EFAIKVIADG FIFTPNAYTR SSWNLIDFVV LLSLWIETIA YMKNDGKLSR IVRGLKALRA1440
 1441 LRLLTVSDTA KANFHNTMIA GFWKIINAAV ISLCLLLPFS IWGLNIFNGR LGYCVDGSSD1500
 1501 MSSCYNEYQN TVFNWQVVSP NVYTNPQLEF NRFASSFATL FEIVSLEGWV DLLNNVMAST1560
 1561 GVGTPKETNA TPFNGFFVVL FNFISIVFIL TLFVSVIISN YSRSTGRAYM TTDQISWYRV1620
 1621 KKILVQVKPS KRKNIENLHF IRRFCYRMTV ERNPVWTRTL NCVLVLHVIA LLLECFPSYD1680
 1681 SLNQFRTSIY MIASSMFFVN SIMLFTGQGF STFMQYKWNI FNLVVSLGAF GTTTGSYFLD1740
 1741 PNSPLININK LFLVAILVFV IPRSNRLSQL LRFASASLPS LISLVFTWII VFLVFAIAMN1800
 1801 QIFGMTRLGP NTTGNINLRS VPKALILLFR CSFGEGWNYI MEDFALTQPF CTSKNNLDNS1860
 1861 DCGNKQYAYI LFIAWNIISM YIFLNMFISL ILDSFDYIGH KESYNQLIQR EEVRKFKRTW1920
 1921 QKFDPQGTGY IKPIELPKLL HSLEGALSFH FYTGSLTIPE LCKKWIIRNN PNDPYDVTIN1980
 1981 YGAIEHTMEQ MDIPKIRERR KAYEMFIEEA LLCMELNNDP GISFTRILLQ LPLYTSFDTS2040
 2041 NCFNLIDYLD RRLLIQKVMK RLHTKRVYET IATYVCRWKF KKDNRLGIKD TNLAFDKKLA2100
 2101 RNSYLRNDQL LINKNPPTIF VTDEGGKRNS SDINVRDSSS LSTERNSVIY GEHSMSSGVY2160
 2161 YPSTPVAKLN HSQHVKHSHP KLFIEIPSQK PQREFVTTED EVKVSPFMDP EEVNEYESKN2220
 2221 SGSLVDVGSI EEILESSSWK NAFDELKSDE KRKK