YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2602, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.76
Transmembrane Helix	94	113	0.90
Non-Cytoplasmic	114	118	0.59
Transmembrane Helix	119	141	0.90
Cytoplasmic	142	160	0.69
Transmembrane Helix	161	182	0.86
Non-Cytoplasmic	183	199	0.58
Transmembrane Helix	200	221	0.86
Cytoplasmic	222	257	0.69
Transmembrane Helix	258	275	0.96
Non-Cytoplasmic	276	295	0.82
Transmembrane Helix	296	317	0.83
Cytoplasmic	318	333	0.72
Transmembrane Helix	334	356	0.88
Non-Cytoplasmic	357	410	0.87
Transmembrane Helix	411	432	0.90
Cytoplasmic	433	462	0.85
Transmembrane Helix	463	483	0.93
Non-Cytoplasmic	484	488	0.78
Transmembrane Helix	489	510	0.92
Cytoplasmic	511	520	0.67
Transmembrane Helix	521	538	0.55
Non-Cytoplasmic	539	571	0.49
Transmembrane Helix	572	595	0.80
Cytoplasmic	596	638	0.42
Transmembrane Helix	639	661	0.93
Non-Cytoplasmic	662	681	0.43
Transmembrane Helix	682	706	0.72
Cytoplasmic	707	720	0.56
Transmembrane Helix	721	743	0.86
Non-Cytoplasmic	744	783	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKIRAVISG GEKPPVDTDN DHNTDFEADR KMPDLDIVVS KSQEFDPVTS HLVNDIMEDE  60
   61 YAAVHVEDDS PYPEVRAAVP STDDPTLPQN TIRAWVIGLI LTTVGCGMNM LFSFHSPSFA 120
  121 ITTFVTSILA WPIGNFWAWI VPDWKIFGAS LNPGPFNVKE HTIITIMANV SFGTGAAYAT 180
  181 DILLAQNMFY KSNFGWGYNL LLIWSTQCIG FAFGGVLRRF VVDSPGAIWP SNLVTATFLT 240
  241 NMHINENHTA NGWKISRLAF FVIVFVASFV WYWFPGYIFQ ALSYFSWITW IKPNNVIINQ 300
  301 VFGSSSGLGM IPNNIALDWN QIAGYIGSPL IPPASVIATI FGSIVVIFWI VVPAIHYSNT 360
  361 WYSQYLPISS TGSFDRFQQT YNVSKIIDHK TLSFNEAEYK KYSPLFLSTT FAISYGLSFA 420
  421 SILATITHTI CFHGRDLIAS LKAKEKPDVH NRLMKAYKPV PEWWYLIVFL VFFGMSIATV 480
  481 RAWPTEMPVW GLVFALIIAI IFLLPVAIIY AKTNIAVGLN VVTEFIVGYV LPGRPIAMML 540
  541 FKTFGYITNN QAVTFVQDMK LGHYMKIDPR TLFWAQFAAT IWGSLVQIAV LEWAYGAIDN 600
  601 LCAADQKNHY TCPNGKVFFN ASIIWGVIGP QRQFSHGQIY YGLLFFFIIG AVTPVINWLI 660
  661 LKKWPNSPVK YLHWPVFFSG TGYIPPATPY NYTSYCAVGL FFGWWIEKKW FHWWSKYNYS 720
  721 LSAGLDIGLA WCSLIIFLCL SLTNTDFPSW WGNDVINTTL DTQVVTNIRH ILKEGEAFGP 780
  781 SSW