YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2599, orf1...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDVDSALAD NVKSFAAGGF GGICAVLTGH PFDLVKVRLQ TGLYNSSVQC VKQTIAKDGL  60
   61 TGLYRGVLPP LLGVTPMFAV SFWGYDVGKR LVSTYTGKSI DQFEIKEIST AGFISAIPTT 120
  121 LVAAPFERVK VMMQIQEGNK SKSMAGVVAE MYKTGGLRSI FKGSVATLAR DGPGSALYFA 180
  181 TYEYLKKELS SPGEDLSLFA IMTAGGFAGV SMWLGVFPID TIKSTQQSSN VPISILQTTK 240
  241 NIYAKGGIKA FFPGVGPALA RSFPANAATF LGVELARKAL DSII

Type	Start	End	Confidence
Cytoplasmic	1	14	0.63
Transmembrane Helix	15	32	0.51
Non-Cytoplasmic	33	65	0.42
Transmembrane Helix	66	85	0.64
Cytoplasmic	86	195	0.63
Transmembrane Helix	196	217	0.89
Non-Cytoplasmic	218	284	0.67