YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRS2_CANAL
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYHIHRLLAP IRSNSVFFSL AQLPKPSLIG CRYKSNNVGS QDSKRTSKNS ILHNLGSYSN  60
   61 SAESEILNKL KPITPNDLYV SCTSFDRIGN ITAVSRKYPK MQFLKENHLF PRDLRKIDTS 120
  121 SIDVVPVIMI RPSSAILVNL LHIKAIIKKD NVMVFDTSKS EVATKLGIFM YDLELKLKSP 180
  181 ANNVCYEFRA LESILVSVTS YLEAEIKLHR QQCGIILAEL EDEVDRAKLQ ELLIRSKKLS 240
  241 SFHQRAILIR DVLEELLEND EDLAGMYLTD LKRFEPEEEN YEEIESILES YYNQCDEYVQ 300
  301 QAGSLLSDIK ATEEIVNIIL DANRNSLMLF ELKITVYTLG FTVATLVPAF YGMNLKNYIE 360
  361 ETNWGFGLVL VVSLLQGLAI TWLNFRKLHK VQKLTMMGTS NSSKAGTGLS RHIPPTSRVD 420
  421 RWKRGSFLYR LFYGSGGKYS KPSKKFDRPT NREKDAMWRM INDDKAMK

Type	Start	End	Confidence
Cytoplasmic	1	333	0.90
Transmembrane Helix	334	353	0.92
Non-Cytoplasmic	354	363	0.82
Transmembrane Helix	364	385	0.93
Cytoplasmic	386	468	0.92