YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3293
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIEVKSRS RSIKSFSSNE LTPDSSVQEL INELSSDNHI SEHRLRLTKL ENGKQVALIP  60
   61 HKTFAENGIP KTASKIELFV KDLGPQISWR TVFLVEYFGP FIFHPLFYYV QSLYGSGSFE 120
  121 HTQTQKFAFA IVLLHFLKRE LETIFVHKFS NATMPAFNIF KNSGHYWILS GFNLAYFIYG 180
  181 PSDKSGVLKY FFHVNELPSS VVYGLFGLWV FAELSNLTTH LILSNLRKGD SKVYVIPFGY 240
  241 GFNWVSCPNY FFESLSWLAY ALLVGNWSAW IFLFVSSGQM WLWAVKKHQR YLKSFGDDYK 300
  301 KLKRKIYIPF VI

Type	Start	End	Confidence
Cytoplasmic	1	162	0.71
Transmembrane Helix	163	180	0.78
Non-Cytoplasmic	181	200	0.67
Transmembrane Helix	201	223	0.78
Cytoplasmic	224	232	0.69
Transmembrane Helix	233	252	0.71
Non-Cytoplasmic	253	259	0.75
Transmembrane Helix	260	283	0.85
Cytoplasmic	284	312	0.95