YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5754
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTATELAST GELKNRSQNN DKNKTNEDSA SSVVQTAEDL LVEKLDLFIS SIESRLDNFE  60
   61 RFFKLDKKAR KEQQQQKGTI NGGGSGGGRP LGRSRRSSST SSIQSFRDFS INNLNMVYER 120
  121 LRLIKKSVLS NSFNNLEYLS KVLADQYNYL FSSLAIDSDS DNEDDEDLSI DQSKEGLQNM 180
  181 GIRSLNKREI LSQKIITTIQ YFDEKLIKID DFIKENKPSA TDDYTHDIIF SKLRFFNFNR 240
  241 ALQNANNRYL HYYELPLIWR ENKYIINGYR FSLSHMSMFK SIFHFNHNES MNIWSHLIGL 300
  301 MIVLYICINH FPNTDLFQQT TWGDNLIMYV FLFAAIKCLV NSSLWHTFSC FAHYPTRQTF 360
  361 ACVDYTGITV LITCSIISVE YCSLYNYPKL LMGYVGFSTL CGLAGFVFNW SSYFDKPECR 420
  421 SIRIGFFLGL SFSGATAMIC KSYYEGIMAT LSFSAPLVYK SFIWYLIGVG FYGGLIPERW 480
  481 RYDVIIEENH LNNRHTYKPT DVILEKMGHD GEDEMEEIEE EFEEIVDQHI SECNDTTTSN 540
  541 TPNHDIFDHD QKFAELIAKH FKQNPIKTPY SNNFLSLWWV DYFLASHNIW HICVVLGILG 600
  601 HYVCLLDMCR GLYKLV

Type	Start	End	Confidence
Cytoplasmic	1	291	0.83
Transmembrane Helix	292	312	0.89
Non-Cytoplasmic	313	325	0.76
Transmembrane Helix	326	348	0.86
Cytoplasmic	349	360	0.73
Transmembrane Helix	361	382	0.86
Non-Cytoplasmic	383	389	0.73
Transmembrane Helix	390	413	0.88
Cytoplasmic	414	421	0.78
Transmembrane Helix	422	444	0.85
Non-Cytoplasmic	445	456	0.69
Transmembrane Helix	457	476	0.83
Cytoplasmic	477	586	0.75
Transmembrane Helix	587	605	0.74
Non-Cytoplasmic	606	616	0.46