YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5753, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	43	0.82
Non-Cytoplasmic	44	64	0.91
Transmembrane Helix	65	87	0.91
Cytoplasmic	88	96	0.86
Transmembrane Helix	97	116	0.95
Non-Cytoplasmic	117	124	0.79
Transmembrane Helix	125	146	0.91
Cytoplasmic	147	158	0.89
Transmembrane Helix	159	177	0.95
Non-Cytoplasmic	178	191	0.78
Transmembrane Helix	192	211	0.91
Cytoplasmic	212	287	0.96
Transmembrane Helix	288	307	0.70
Non-Cytoplasmic	308	317	0.64
Transmembrane Helix	318	341	0.89
Cytoplasmic	342	348	0.71
Transmembrane Helix	349	369	0.96
Non-Cytoplasmic	370	379	0.62
Transmembrane Helix	380	401	0.93
Cytoplasmic	402	412	0.71
Transmembrane Helix	413	437	0.68
Non-Cytoplasmic	438	442	0.66
Transmembrane Helix	443	463	0.92
Cytoplasmic	464	546	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGFIDNIFK RTTTAGLTGR KLRAAVTITA TLGFSLFGYD QGLMAGLISA EQFNWEFPAT  60
   61 KDNSVIQGAV TASYELGCFF GAIFALLRGD ALGRKPIIFF GATIIILGTI ISVTPFRPHW 120
  121 PLGQFVVGRV ITGIGNGMNT ATIPVWQSEM SKPENRGKLV NLEGAVVAFG TFIAYWLDFG 180
  181 LSYVDSSVSW RFPVAFQIFF ALWVIFGIIQ LPESPRWLIS KDRKPEAFEV LAALNDTTPD 240
  241 DDAIVAEASV IIDAVRRNAK VQAGFKDLFT GGKTAHFQRM LIGSSTQFFQ QFTGCNAAIY 300
  301 YSTLLFYETV FHHTKYRLSM ILGGVFATIY ALATLPSFFL IDTLGRRNLF LIGAIGQGIS 360
  361 FLISFACLIN PTEQNAKGAA VGIYLFIVFF AFTILPLPWI YPPEINPLRT RTTASAVSTC 420
  421 TNWLTNFAVV MFTPPFISAS GWGCYLYFAV MNFLFVPIIF FFYPETAGRS LEEIDIIFAK 480
  481 AYVEKRQPWR VAATLPKLSL QEVEDESKSL GLYDDDFEKD NFETKEDVSD GTASNSNGVF 540
  541 EKPENV