YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5751, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVSPNSKI EHLTPDNITV TAPSEPPFSS SSSTSASAST PTPIAEEKLS TPIPTPSPSH  60
   61 RRGSSIGSST SPSSSTRNRS NSNSANALTP TPSHHQPAHS ITRQRRSSSL IQHLEPDTLD 120
  121 TKIDQALNPN VNANWVHQKG AWVIHVVIII LVKMIFNFIS VLNNDWKWTL TNLTYNIGSY 180
  181 IMFHQVKGTP FEFNSGAYDN LTMWEQIDNG DQYTPSKKFL MLVPIGLFLI STHYSSYNLN 240
  241 LFILNGLSCL CVVVPKLAFA HRLRVTLY

Type	Start	End	Confidence
Cytoplasmic	1	140	0.85
Transmembrane Helix	141	162	0.82
Non-Cytoplasmic	163	238	0.74
Transmembrane Helix	239	260	0.84
Cytoplasmic	261	268	0.84