YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5720, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.97
Transmembrane Helix	60	81	0.89
Non-Cytoplasmic	82	97	0.81
Transmembrane Helix	98	119	0.90
Cytoplasmic	120	125	0.85
Transmembrane Helix	126	147	0.88
Non-Cytoplasmic	148	152	0.79
Transmembrane Helix	153	174	0.93
Cytoplasmic	175	184	0.72
Transmembrane Helix	185	204	0.96
Non-Cytoplasmic	205	213	0.80
Transmembrane Helix	214	235	0.95
Cytoplasmic	236	274	0.97
Transmembrane Helix	275	296	0.93
Non-Cytoplasmic	297	307	0.74
Transmembrane Helix	308	327	0.87
Cytoplasmic	328	337	0.81
Transmembrane Helix	338	359	0.92
Non-Cytoplasmic	360	365	0.82
Transmembrane Helix	366	388	0.92
Cytoplasmic	389	400	0.83
Transmembrane Helix	401	423	0.92
Non-Cytoplasmic	424	432	0.84
Transmembrane Helix	433	452	0.94
Cytoplasmic	453	465	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTISSFES VELTAVSLRH QIQFRPEDES SSDSLTPIAT VTEDDSSIEY PEGGLKAYSV  60
   61 ILGSFLGLIV NLGLINSIGA IQAYVSTHQL SNLKATSISW IFSIYLSLAY AGGIITGPIF 120
  121 DKRGPLEILI AATAFIFLGL MGAAQSVEIW QFILSFISLG IGSGLGTTPL IVVISHWFCK 180
  181 KSGSFTGFAT SGGSIGGLIF PLMLRHTYNV YGYVWAIRIL AFMSLGCMVC SIFLVKERFH 240
  241 KVKTEVIAQQ TQKTKFSIQV LMDKLKSVSA SDFKYIYVIL GAFFAELSLI LLVTYFPSYA 300
  301 IAQGASESTS LLLLTVWNAT GILGRWIPGF VSDIYGRYNV YVFMLILYCL CIFVLLYPFG 360
  361 SSEKILYAFA GVGGYCSGSI LGLLPACLSQ ITPVNEIGTK YGILNAVLSL ANLFGIPIAA 420
  421 SIIKDGTPKE YNNFVVLVGC LAVAGTLFWY FSRVAISGFK LNIKV