YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SWF1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFTLIVCLT IISSLATFLL LFGDSPSFRN TPIQKLRNSL LSISRDIFQF YHWLDEKLNG  60
   61 QLLKILNWLV PVGYVMVVTV CFQQFLTHTL PMLSSPGLFR LFTIYFSMVL IYASTILAAF 120
  121 SDPGRITTIN LKSYPYTPNQ LIFFDGKTCS TCHIAKPARS KHCSVCNQCF LLYDHHCVWI 180
  181 NNCVGYYNYK WFMLFLISNI NMLGYGGWLC YWALTPVSWR KITSTNNANK VTGIFLILCS 240
  241 IFIVITTLFT FLHLRYIYLG VTTNELDKWS EIDHLVGLGV LYQIEPSIAN ENYVERAILD 300
  301 GNAVYISLKD ERILIYNSNV KNFKLQLIQS VEDDLVNIYD HGFWNNLIER LKW

Type	Start	End	Confidence
Cytoplasmic	1	4	0.50
Transmembrane Helix	5	23	0.75
Non-Cytoplasmic	24	64	0.70
Transmembrane Helix	65	87	0.83
Cytoplasmic	88	97	0.64
Transmembrane Helix	98	120	0.89
Non-Cytoplasmic	121	190	0.75
Transmembrane Helix	191	214	0.87
Cytoplasmic	215	230	0.71
Transmembrane Helix	231	254	0.89
Non-Cytoplasmic	255	353	0.76