YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3249, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSSLGV PHENPIRHRS SSVGRIDVGD TSASLSTMPT TRSSRRRSIA RLKELQDNST  60
   61 TDSAIVHKLY VGFRELTYRH TWIIPLIVLL MAFGTYYLSS PSGKVHQVLE DMIIPSYHIP 120
  121 GTDQYGKGGN DFKFVGFYAI FFTFLREFMM CCVLRPISVW FGIKKEAKQK RFLEQTYAMF 180
  181 YYGITGPFGL WIMRRLPLWY FNTTQFYINY PHKTHDIYFK IYYLGQAAFW VQQSVVLILQ 240
  241 LEKPRKDFKE LVLHHIITIA LIWCSYRFHF TWMGLAVYIT MDISDFFLAL SKTLNYLESP 300
  301 ITGPFFVIFI GVWIYLRHYI NLQILWSVLT EFRTVGDFEL NWITQQYKCW ISQPITFFLI 360
  361 FALQLVNFYW LVLIFRILYR YVFTGVSKDE RSDDEDEDED SEDSADEKKK EQ

Type	Start	End	Confidence
Cytoplasmic	1	77	0.99
Transmembrane Helix	78	99	0.89
Non-Cytoplasmic	100	136	0.95
Transmembrane Helix	137	159	0.88
Cytoplasmic	160	176	0.88
Transmembrane Helix	177	198	0.86
Non-Cytoplasmic	199	220	0.91
Transmembrane Helix	221	241	0.79
Cytoplasmic	242	250	0.84
Transmembrane Helix	251	270	0.82
Non-Cytoplasmic	271	295	0.54
Transmembrane Helix	296	319	0.80
Cytoplasmic	320	349	0.51
Transmembrane Helix	350	377	0.75
Non-Cytoplasmic	378	412	0.50