YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3240, orf1...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLKDSTVA VITGTSSNLG FNIAVRLLEG LPDNKEITLV VTSRTLPKVK EVISDIKKYI  60
   61 VAKIPTKVNK VEFDYLLVDF TDMVSILSAY YELNKRYKHI DYLFINAAQG VYGGIDWTGA 120
  121 VLEVLQSPIE AVTNPTYKLQ KVGVESGDKL GLVFQANVFG PYYFIHRIKH LLENGGKIVW 180
  181 VSSLMSSPKY LSFNDLQLLR SPASYEGSKR LVDLMHFGTY NKLEREHGIK QYLVHPGIFT 240
  241 SFSFFQYLNV FTYYGMLFLF YLARFLGSPY HNISGYIAAN APVAAALGQT KQNCKTASAC 300
  301 TRSGKEYLLE EEIDSTGSDD VVSYLDTLTK EWDEKLKDQI VNTRQP

Type	Start	End	Confidence
Non-Cytoplasmic	1	244	0.71
Transmembrane Helix	245	267	0.57
Cytoplasmic	268	346	0.57