YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3228, orf1...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.44
Transmembrane Helix	7	26	0.76
Non-Cytoplasmic	27	273	0.61
Transmembrane Helix	274	298	0.85
Cytoplasmic	299	362	0.61
Transmembrane Helix	363	388	0.86
Non-Cytoplasmic	389	403	0.56
Transmembrane Helix	404	426	0.93
Cytoplasmic	427	466	0.60
Transmembrane Helix	467	491	0.87
Non-Cytoplasmic	492	496	0.56
Transmembrane Helix	497	521	0.84
Cytoplasmic	522	587	0.62
Transmembrane Helix	588	611	0.86
Non-Cytoplasmic	612	621	0.58
Transmembrane Helix	622	648	0.85
Cytoplasmic	649	655	0.57
Transmembrane Helix	656	678	0.80
Non-Cytoplasmic	679	694	0.67
Transmembrane Helix	695	720	0.87
Cytoplasmic	721	731	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSISWIYI FYLFITSILA FDFGLGPTYY KHGDKVDLLV NKIESDTTQL PFAYHSLPFV  60
   61 CRPINGAKPV HLSLGELLKG DRIWQSGYQL EFGVDVPCNR LCDMVLSTHA IKRASDLIKD 120
  121 GYVVHWTVDG LPEATTFEST NHRNKYYAAG FPLGFVSPSD DEQLSYIYNH VMLVIRYHRE 180
  181 KETASKNGGD PKYTIVGFEV YPKSVNDEHC PGSSKNYQNL PLFYSVDDKN QLIESKTTIA 240
  241 YTYSVYWRED NSIDYDSRWE LYYENETNGA HVHIHWISFI NSIILIFLAS LIVMIVLIKV 300
  301 LKKDIANNGN NDNISGNTVL PLIKNDISID IDGDSSSSSV TNNIGSGWKN LINQVNQIPQ 360
  361 YPIFLITLVS AGIQIVIAIM GVISILMINS IGTKNNFFNS HQGAFFSISI FCISISGSIS 420
  421 SYFGILLHKY FYHPHPHLHQ TSGNNNNHNN NNNNLGKTYD QLTIIKLSLL FSAALPAFLF 480
  481 LIIFILNFFV WAKESSAALP FGTIVVFLLI FILIQCPLGI IGGNYANYAN YANYANYQKS 540
  541 LSMPQKLFFA SMKTPPSSPL YEKQFQFHSK NKPSNDSLLT KFISYGKTIL IYGLIPFGIV 600
  601 YVELLFIFNS IWLEKTTFYY MYGFLFITTL MLFIIIIESA IVAIYISLVV YNKSNWIWLS 660
  661 FQVGSSIGWY IYGYSIYYFL RILNVDDFVS GLLYFVYMAL ASLMIGIASG SIGVLTGLIF 720
  721 IRKIYGAIKV D