YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10735, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.89
Transmembrane Helix	34	58	0.81
Non-Cytoplasmic	59	89	0.94
Transmembrane Helix	90	111	0.91
Cytoplasmic	112	118	0.82
Transmembrane Helix	119	141	0.89
Non-Cytoplasmic	142	151	0.81
Transmembrane Helix	152	172	0.92
Cytoplasmic	173	180	0.92
Transmembrane Helix	181	201	0.93
Non-Cytoplasmic	202	212	0.78
Transmembrane Helix	213	232	0.76
Cytoplasmic	233	302	0.84
Transmembrane Helix	303	322	0.91
Non-Cytoplasmic	323	326	0.73
Transmembrane Helix	327	348	0.85
Cytoplasmic	349	352	0.67
Transmembrane Helix	353	374	0.73
Non-Cytoplasmic	375	380	0.80
Transmembrane Helix	381	402	0.90
Cytoplasmic	403	410	0.78
Transmembrane Helix	411	431	0.90
Non-Cytoplasmic	432	444	0.86
Transmembrane Helix	445	463	0.92
Cytoplasmic	464	478	0.85
Transmembrane Helix	479	498	0.89
Non-Cytoplasmic	499	519	0.83
Transmembrane Helix	520	542	0.86
Cytoplasmic	543	550	0.78
Transmembrane Helix	551	570	0.87
Non-Cytoplasmic	571	574	0.61
Transmembrane Helix	575	596	0.86
Cytoplasmic	597	604	0.82
Transmembrane Helix	605	628	0.89
Non-Cytoplasmic	629	639	0.83
Transmembrane Helix	640	658	0.93
Cytoplasmic	659	672	0.94
Transmembrane Helix	673	693	0.90
Non-Cytoplasmic	694	1022	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKNPTSVD SREKEKNKEL IQKTPFFTFN ASIISYLHTV FASSSFLAAL AVGSYLHYYK  60
   61 IVQNSSFGYP DEWFPSVSAT IGDRYPERSV FQIIIALTAG PRFLLLIFNF ISLYKKNSYL 120
  121 PYIATISGTL RTFTAGGWMY ITSTDDHDAH DVFMILYMVL TIPWTVCNTL LSPKHSLQRN 180
  181 ARFYSAMAFF GTIIPLIYWF IQHKVHIRPG AYSIYAYFEW GLIFFDILFD SWSAIDFTNI 240
  241 DISISATGIE LVHVDTTATE STTKVTETET ETEINVEIET EVIPGPFDSQ FSDIDVIVNL 300
  301 INSFIYWTVV TSLFLCVWYF PLWHMGISGY EAAVLSFFLA PLLLIIPVSR NLFVTYPSIA 360
  361 RSLTVILGVG AYKVPDPEQR LLTITAGTVF AVISVLSEFS IFATNPKKLN SYISTFTLGL 420
  421 LATSIFKYLC FSNNPIWPIM HKENGGYNAI GIFLGLLAAF FTPKQKQLSP KATNNEVNGA 480
  481 NGSLLLAALG FGGYYFSLSS YLSDSGTLAL WTWEGFPIKG PTPITGALYH FIAIMTAIII 540
  541 NVKSHPNFFS SWNYNIIIGG GSALVLYNFG GWIGYIGAVI YTFYLTSIGP IIWNSIKGYN 600
  601 ITGAFFLGYF FNILLGLASV WIVAYAFVPG GPLLRERTDI VLGTSYFSIL AGVLNYNLRR 660
  661 EEFTKIKFSS CKIFKQTLTI ITILLALSIS IFIKRYPSEP FKPYNEESQS FTAGIWCVHF 720
  721 GLDNDMWSSE TRMRDLIRDA EIDIIGLLES DTQRLIGGNR DFTQTIAEDL GMYVDYGPGP 780
  781 NKHTWGAALL SKFPIIESTH HLLPSPVGEL APAIHATLDI YGELVDVVVF HSGQEEDVED 840
  841 RRLQSLGIQE IMGISSRPLI LLSYLVTEPL QGNYNSYVSE KSRVYDIDNP DWDRWCEYIL 900
  901 FRDLRKVAYA RISRSTITDT ELQIAKFKLL NEDEKNDDDL EFYYGNHFVN EDEIDENLRM 960
  961 PQLFRGDGVR GHRYHVFDEP RYFAQHKWQR YNEQEQEQEQ QQQEEHQEEE EENGQNEEGD1020
 1021 EY