YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.12902, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	191	0.81
Transmembrane Helix	192	211	0.95
Non-Cytoplasmic	212	217	0.85
Transmembrane Helix	218	240	0.88
Cytoplasmic	241	251	0.91
Transmembrane Helix	252	275	0.90
Non-Cytoplasmic	276	286	0.86
Transmembrane Helix	287	308	0.92
Cytoplasmic	309	375	0.97
Transmembrane Helix	376	398	0.90
Non-Cytoplasmic	399	412	0.81
Transmembrane Helix	413	434	0.92
Cytoplasmic	435	441	0.92
Transmembrane Helix	442	463	0.95
Non-Cytoplasmic	464	469	0.84
Transmembrane Helix	470	491	0.73
Cytoplasmic	492	506	0.69
Transmembrane Helix	507	527	0.92
Non-Cytoplasmic	528	538	0.72
Transmembrane Helix	539	558	0.94
Cytoplasmic	559	630	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNPEKPTR NEDLFENSSS SSSVPHNKEA SELESVNSTA EREGGEHGNI LAQYTEEQVM  60
   61 QMGRNYAHKY DLDPDLFGRA AALARAPSAF NSMPFLTDEE KQGLYLEATK KWHIPRKLIE 120
  121 VIAVGAIAAA TQGMDESTIS GATLFYPKAF GVTEMKNADL IEGLVNSAPY LCCSVIACWT 180
  181 SDYWNRHLGR KWTIFWTCLI SAVTCIWQGF VNNWWHLFIA RFFLGFGIGV KSATVPAYAA 240
  241 ECTPKHVRGA LVMLWQFFTA VGIMFGFVSA LAFYYVPHKS FGTGLNWRLM LGSACIPPII 300
  301 VLFQIPFVPE SPRWLMGKER HKEAFESLKA LRFEEIAAAR DCFYQYVLLK EEGTYDIPTW 360
  361 KRLIQMFTIR RNRNGAIGSW IVMFMQQFCG INVIAYYASS IFIKARYSEI SALLASWGFG 420
  421 MINFVFAIPA FLTIDKFGRR NLLLFSFPLM GVFLLIAGFG FLIHDRQGQL AMVTTGIYIF 480
  481 SAIYSSSEGP VPFTYSAEAF PLYIRDLGMS WATATCWFFN FILAFTWPRL QNAFTPTGAF 540
  541 GWYAAWNVIG FFLVLWFLPE TKGLTLEELD DVFAVPMYEH AVYRTKELLN GFQRVILRRN 600
  601 IPPMPPLYHH QRMAVTNPEW NDKTEVDHIE