YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5428, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLVLIALPL VMFVATFVAG ILPLKLTVAQ HHLKYLSFLS MGILIGTAMM IILPEGIETI  60
   61 SHETTDVASY VGFPILLGFL TMYILDCMFS TNVKAQESSV VESVVGSPIT LGLIFHGIID 120
  121 GISLGSSLAS GEVMTLIIFA AIIIHKIPTS FSLSTILLQE GTSDSKLYWH ILLFALSSPS 180
  181 ACWFTFVLIK LVNAKSNLVI GVLFLYSAGT FLFVVNHVMH EFSSNDFYTL PTSVESDTTT 240
  241 VESHSKISRN ELILSLIGIL IPTLLSFAKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.76
Transmembrane Helix	6	26	0.93
Cytoplasmic	27	34	0.69
Transmembrane Helix	35	54	0.94
Non-Cytoplasmic	55	66	0.72
Transmembrane Helix	67	89	0.86
Cytoplasmic	90	99	0.73
Transmembrane Helix	100	119	0.75
Non-Cytoplasmic	120	127	0.48
Transmembrane Helix	128	149	0.76
Cytoplasmic	150	166	0.50
Transmembrane Helix	167	189	0.92
Non-Cytoplasmic	190	197	0.49
Transmembrane Helix	198	219	0.90
Cytoplasmic	220	251	0.59
Transmembrane Helix	252	268	0.60
Non-Cytoplasmic	269	270	0.42