YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7493812, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVEQLETV DITKLNAIAA GTNKKVPRVV AAGLGGKLMG TSDLVKVTAE EITKDSMESL  60
   61 AEKDAREKAK YANKKHISEE PWTLDNFAKK INWLNMILVV FIPVFGAYCA WNYPPQWKTL 120
  121 VLTFVMYAFS GISITAGYHR LYSHKSYDAA LPVRLFFAFF GAGAIEGSIK WWGHSHRIHH 180
  181 RYTDTPRDPY DARRGFWFSH MGWMLTKANP KNRARADISD LVADWVVTFQ HRHYLLLMIT 240
  241 AAFIFPTLVA GLGWGDYWGG FIYAGILKGF AIQQATFCVN SLAHWIGVQP FDDRRTPRDH 300
  301 VLTAFVTFGE GYHNFHHEFP SDYRNALKWY QYDPTKVTIW CLSKLGLAWN LKKFSQNAIE 360
  361 QGLVQQQQKK LDRMKNKLNW GAEIEKLPVW TREEFNERAK QEGLIIISGI IHNVKNFIKE 420
  421 HPGGQALVRA SLGKDATKAF NGAVYAHSNA AHNLLATMRV AVVKDGEVNA DTFDLQEQMM 480
  481 EKEKQS

Type	Start	End	Confidence
Cytoplasmic	1	90	0.90
Transmembrane Helix	91	111	0.93
Non-Cytoplasmic	112	119	0.71
Transmembrane Helix	120	142	0.87
Cytoplasmic	143	150	0.79
Transmembrane Helix	151	172	0.82
Non-Cytoplasmic	173	233	0.72
Transmembrane Helix	234	255	0.92
Cytoplasmic	256	265	0.53
Transmembrane Helix	266	288	0.73
Non-Cytoplasmic	289	486	0.56