YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5100, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.81
Transmembrane Helix	8	29	0.67
Non-Cytoplasmic	30	71	0.88
Transmembrane Helix	72	90	0.93
Cytoplasmic	91	110	0.82
Transmembrane Helix	111	129	0.94
Non-Cytoplasmic	130	134	0.81
Transmembrane Helix	135	154	0.93
Cytoplasmic	155	163	0.87
Transmembrane Helix	164	181	0.88
Non-Cytoplasmic	182	195	0.74
Transmembrane Helix	196	218	0.82
Cytoplasmic	219	324	0.94
Transmembrane Helix	325	346	0.90
Non-Cytoplasmic	347	364	0.93
Transmembrane Helix	365	386	0.93
Cytoplasmic	387	437	0.88
Transmembrane Helix	438	464	0.59
Non-Cytoplasmic	465	469	0.79
Transmembrane Helix	470	491	0.88
Cytoplasmic	492	554	0.92
Transmembrane Helix	555	575	0.88
Non-Cytoplasmic	576	585	0.77
Transmembrane Helix	586	609	0.71
Cytoplasmic	610	1021	0.94
Transmembrane Helix	1022	1043	0.84
Non-Cytoplasmic	1044	1066	0.88
Transmembrane Helix	1067	1090	0.88
Cytoplasmic	1091	1133	0.92
Transmembrane Helix	1134	1154	0.84
Non-Cytoplasmic	1155	1159	0.53
Transmembrane Helix	1160	1178	0.93
Cytoplasmic	1179	1251	0.96
Transmembrane Helix	1252	1273	0.86
Non-Cytoplasmic	1274	1279	0.64
Transmembrane Helix	1280	1300	0.80
Cytoplasmic	1301	1606	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNESNRELIL GLSPVHLSLF NSESLLHTFN FFGVGDGQAN IASNYVTASK FVIPQPLYSP  60
   61 HGNALNPAFV ELIGQAVNTF FAIFMLFQLT RLLLTKKKSH RIYTPTPFSQ TLKISLVLLQ 120
  121 VILVASLYFL NKNSYFIGGI AATVLALILH LVEFRRSPIA IESLLTYWSA NTAFTFAVFI 180
  181 QDSYSKHKIY ANSGPAYVIE IISLVNSFLI FVFEVGYYKP GFEITNEKFL DTVNLFSYFT 240
  241 FYYLQPLINK IYATDDVQLT DLPDILGNIT CDDTKAKVAK AWEEELKRTK KPGLVSKVWS 300
  301 FVTRRKVNSK PQMFLAIAKA FFDKFAISIT LAIIVTGLSF LQPFLLRKFI QFFSTYFYSV 360
  361 EKPPIIIGYF WASVMFLTSV ANFIAFNQAF KTQFDLGYEI QSSLTTLIYE KALRLSPQSR 420
  421 KNKPTGDIIN HITMDIDIIF WFCWQLGEYL ASPLKLAVCL AALYKLFSNA TWAGVITAII 480
  481 VAPLATLVNA SMSKNYIQLM KDKDERTSLI TEILNSAKSI KFYSWEKPML ARLSHIRNDR 540
  541 ELNNIKKIGV VSALAQFLWS CIPFFISCAT YATYAYFYNV PLTPDIVFPA LALFDLLSEP 600
  601 MLLIPSFIVE VIEVSTSLAR IGELLCLDEL ADDQHGYVKR DPEPNDNSIY SVIVKDATFV 660
  661 WSEETQQKQY TDEESEVQEV PASNVALKNI NFSARKGELA CIVGKVGSGK STLIKAILGD 720
  721 VPIKIPSYSD DSTNPTPSVE TFGSIAYCPQ NPWILNGTVK ENILFGHKYD AEFYQKTIDA 780
  781 CELISDFKNL PDGDQTVVGE KGISLSGGQK ARISLARSVY TRADIYLLDD ILSAVDAHVG 840
  841 KNIIKKVLSN EGLIGNRCRI LATNSVPVLH EANDIYLIAG GAFVEHGKFK EVMKRNGDLA 900
  901 KLIKEYGRKK DEPTEEETTE ASTEPKEEDH SNGKSDTAVH DELDTDELVD EIVDYVGEQN 960
  961 RGVVEQAILR RASVVSYGHN YENDEADNGQ IRKTRHEQEE SRKGTVPWDI FKQYIIACDY1020
 1021 KYFSFYVAAT FSVVLISAGE KYLLSYWSQL NSEQNDTVEP VFFLGTYATL GVVSGFLTYM1080
 1081 GALVIWSYCI VKGSTYFHNK MAESVLRSPM SFFDTTPIGR ILNRFTEDIG KIDMNLPWTI1140
 1141 ISFITTLLNG FVTFGVILSF LPLMLVVIVS LLFVYNYFRI RFVPTTRELK RLESIAKSPV1200
 1201 LATIQESING VETIKAFHQR ERFVYKSKKL IDEKTLIGVV QQNCNRWLSM RLQTISSSIM1260
 1261 FFTALLAVVT LGGKHPILPS ILGFVMTYSM SITYILNSLV RIWAEMQAGG VAIERIIEYC1320
 1321 DLPSEAPMII EDKRPQDSWP AHGVVKFKKY STAYRKHLDP VLREIELTIN SKEKVGIVGR1380
 1381 TGAGKSSLTL ALFRIIEATG GNIEIDGVDT SQIGLYDLRH HLTIIPQEAH TFRASVRENL1440
 1441 DPFGEYSDDK LWKVLELAHL KEHVTKMETD PTEEEKKASK NPDELSKKVG LDAQIEEGGS1500
 1501 NLSSGQKQLL CLARALLNET SKILVLDEAT AAVDFQTDKI IQETIRTEFK DKTILTIAHR1560
 1561 IDTIMDSDKI LVLDSGKVAE FDSPQNLLKN KDSIFYSLAK EGGYID