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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.5068
Protein type: Transmembrane
Type Confidence: 0.47
Topology Confidence: 0.35
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLFYFISYI ISILLVSIIA SPRLERITTK YLSPQQQQQQ QQRRDQAYNP ATPTNNIYTS  60
   61 ASLQPLAERS LDDWDLNNII LLSDINGSLH CVNRDDGNLI WSLPIDEPLV KIQSNIKDKS 120
  121 AAHNILWFVE PYQDGTLYYF TPKFGLNKLP TSIKDLVMES PFTLSGDDKI YTGTRKTSLY 180
  181 NINIHTGEIK SSFGNTDECP IPRSTLPPEA AFNADDTIMI GKTTYELSIH SKSNSDVMWN 240
  241 VTYSQWVPNN IDNDLILQNQ QSLDKIYFTP FHDRSLLAIN KDIGTPIWIS KLPGLPVSIF 300
  301 DVFSNSAKTN DYLLLPHPLK VLNDLQSNDI NHQSMVFVNK TSSTSSNSQD HLNDQWVAMS 360
  361 FRNYPTLIKS APISKYQEVL NKYYAGINTN TNNKNDKEFT VDYIENFQIV NNSNENIENL 420
  421 ISGIHRVFEL SPENSYQPFE RFHSPLDDIK RIGDGSSNDD KDEQSSAERT KNNGGAPDII 480
  481 GGLKFPSRLS TLTSEILLIE PSKDNQLDQQ SGNSHHNQDT SKLDNSNVTS SGIMRRIIED 540
  541 IAVLMVLFVL LMTFGKSNNM VKKIFGQFTK QQHELDEEKQ SQQEKEIVVE APVSLVSDQT 600
  601 TLNIDSKPVD KIEEINEKIT DVIEVKQDDD NDTLVVDTKT KSSSPETDTE TETNTKNTKK 660
  661 SKKVVIVEPE TDLESEPDQQ TETDTATITE INEETTPKKK RKRGSRGGRR GGARKNNKQK 720
  721 TNGDEDQEDQ QQNDESVVDE EIIPTKSLIP PSSLPAIKSR KKLQIENNLV ISDKILGYGS 780
  781 HGTVVFQGTF ENRPVAVKRM LLDFYDIANH EVRLLQESDD HPNVVRYFCS QSSESEKFLY 840
  841 IALELCLCTL EDIIEKPQNM PNLCIPKRND ILYQLTSGLH YLHSLKIVHR DIKPQNILVA 900
  901 NIKKNGKRKN QITEIDETCE NNVRLLISDF GLCKKLENDQ SSFRATTQNA ASGTSGWRAP 960
  961 ELLLNHDLWE ISPDSISSIH SNSNSNGNGN GNGATNGSVS NSATSGKRLT KAIDIFSLGC1020
 1021 VFYYILTGGY HPFGDRYLRE GNIIKGEYDL SLLMEKCPND RYESIDLISK IISHDPSQRP1080
 1081 NTGKILKHPL FWSFSKRLEF LLKVSDRFEI EKRDPPSPLL LKLEEHAKAV HNGNWHKLLN1140
 1141 DDEFMDNLGK YRKYSPEKLM DLLRAMRNKY HHYNDMPESL QLKMAPLPDG FYKYFNDKFP1200
 1201 KLLMEIYYVV EENFRNEHVF KEYY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle