YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATG22_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.94
Transmembrane Helix	43	65	0.80
Non-Cytoplasmic	66	106	0.94
Transmembrane Helix	107	128	0.93
Cytoplasmic	129	136	0.86
Transmembrane Helix	137	156	0.95
Non-Cytoplasmic	157	163	0.81
Transmembrane Helix	164	184	0.88
Cytoplasmic	185	204	0.87
Transmembrane Helix	205	229	0.92
Non-Cytoplasmic	230	243	0.84
Transmembrane Helix	244	266	0.93
Cytoplasmic	267	298	0.93
Transmembrane Helix	299	323	0.79
Non-Cytoplasmic	324	337	0.88
Transmembrane Helix	338	359	0.93
Cytoplasmic	360	367	0.93
Transmembrane Helix	368	391	0.88
Non-Cytoplasmic	392	435	0.85
Transmembrane Helix	436	458	0.89
Cytoplasmic	459	466	0.79
Transmembrane Helix	467	486	0.88
Non-Cytoplasmic	487	500	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVNHNHISN TSVNNSEDVL EAQDEISNDN NKNQESIWNK KSIFHTWLLL CYSTGPVASM  60
   61 SRTYIPASIQ SIAKNVGKTK MNQPCGTQGN DCYVKFGFMT VHHTSYVLYL RAVSTAIEGV 120
  121 VAIFLMGIAD YSNYRKSFLI FSILVYGFLA LPFIGLTNND YQTLVLASIL YSLLIIDDSI 180
  181 YQILEGSYIP LFMRADKKNP MQRGSVVAVL GLFLGNLGGI TALVIGIIIS YLSGTPESKG 240
  241 YHNFLLAITI AGCLTIGLSL FSALYIPNVQ GKQRIDNFLV LPFKRFFNLL KDIQKYPMAF 300
  301 LYCISWVIWN VSFNNFMSMF LLLFRSTLGL GNSDAEYTVY TFMSYICSSW GSLLWMFLYQ 360
  361 KWNSNIKYWG YSFLSVSLLA NFWGCLGIHK LTPLGYQNRW EFWVFEVFYS ATSSAMRSLN 420
  421 RCVYSSLLPE GNEAQYFGLE VTLGIASGWI GGLVNAVIQD RTNDDRFPFL PNMFLVVVSL 480
  481 IVYYYVDLQK GKNDVNNGNS