YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8104, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	201	0.99
Transmembrane Helix	202	224	0.90
Non-Cytoplasmic	225	238	0.82
Transmembrane Helix	239	259	0.89
Cytoplasmic	260	269	0.79
Transmembrane Helix	270	288	0.96
Non-Cytoplasmic	289	295	0.74
Transmembrane Helix	296	317	0.90
Cytoplasmic	318	328	0.77
Transmembrane Helix	329	352	0.90
Non-Cytoplasmic	353	359	0.88
Transmembrane Helix	360	381	0.89
Cytoplasmic	382	429	0.93
Transmembrane Helix	430	452	0.89
Non-Cytoplasmic	453	465	0.86
Transmembrane Helix	466	488	0.91
Cytoplasmic	489	519	0.96
Transmembrane Helix	520	539	0.92
Non-Cytoplasmic	540	549	0.77
Transmembrane Helix	550	573	0.81
Cytoplasmic	574	589	0.52
Transmembrane Helix	590	605	0.79
Non-Cytoplasmic	606	614	0.65
Transmembrane Helix	615	637	0.90
Cytoplasmic	638	702	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFGTSKEE ESQLRQAVLT TSETRQSYSS NTESSVYETA DEMDSQVSPN IDITDHEKDN  60
   61 QGINTDETNN NHHTAATNVS PQGDDDSTVQ GHEYSANPIS DSNDDSDSSV PKNFSGIDGD 120
  121 NEEEEEEENR LNREYTIERI KSHKSLEAAA EEQIKEEESF IHPHSSSSTT FDKEKIYTVD 180
  181 ELSYDGPDDK DNPHNWPKWK KWMITYTAAI LCLVCSLGSS MYTGSVPEIM KRFGASQELC 240
  241 LAGLTFYLLG LAFGPALSGP LSEVFGRKPL YMFSLPIAML FTMGVGLAKN IETILVLRFF 300
  301 CGFFSSPALA VASGTISDCW AINPAEQSFA VALFCLCPFL GPVLGPIIGG FAGEYKGWQW 360
  361 ASAWVLLMFF GAVWPFTIIL PETYRPIILA RKAQKRGMKV EVPKLNIAFV KKVIKFNLFM 420
  421 PLKLLIEEPI VLVLSVYISF VFAVLFGFFE AFPVIFRGVH HMDLGISGLP FISVGIGLFL 480
  481 GVVTYVILDK TIFFPKNPDG SRGKRDADGN FIWGVPEKKL LNGKIGAPFL PIALFWLGWS 540
  541 GRSDSIHWMA PTASGVFFGY GLILVFFSVV SYFSMSFPPI YVASAIAANN LLRYTLASVF 600
  601 PLFTVQCFEN LGIGWAGSLF AFIALAMVPV PYVFGYFGPH LRARSKFGYA AYFKKLEEQK 660
  661 ELQAAADAKK KNTNRTQEQS VNSSAVELEM SSESEKAVAE KV