YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11307, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNTQGLAVG LAVGIPSFII LVVVGIFWYR NQQKQKHEDM NDNEIDIGLR DDHSFNQFQE  60
   61 ELHKQYEKNN DDDETHIREE KLTHDSSENS NDGQQHSTST ASRQTPTPYS QHYNSNHGDQ 120
  121 RPQTSYDFYE TFIPILPSNQ QRSPSVQGST ADIADTHPND TDTDLETTTN NNNGTGNNLA 180
  181 TDSSSSLINS HLRTSSNDLN TLAKQLNNPV FFEKLPSRAT KYQVKSVNNN YGNTNAVGKN 240
  241 NNSSSDLINN YLIGETHAIN DHFTYEAPKV EVTDLSRPEE KN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.48
Transmembrane Helix	7	29	0.94
Non-Cytoplasmic	30	282	0.50