YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11306, orf...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVILSILTA CSYVFAIYFA PPPSIKHKDR NDPDVVRHRI SRIIILCALL MIIIPNLVLI  60
   61 QGKNHNKTYL DKIRQLGIIP GFTNSGSLTV DLFNIGYTIY FILILYSSSI YQIYIEEVEL 120
  121 FDWKYQISSF RTASVLYPIR DYLLAPVSEE LIYRGLIFLI NNDANESVDR KNQHVFTPFL 180
  181 FGVAHIHHGI QLYRQNVPTM TIVITTGFQF TYTSMFGKLS EVIYSATDQN LWSCIVLHMI 240
  241 CNIFGLPNFS LNSPRVTHQV VFYSLIVLGI VHSLIVLLYY M

Type	Start	End	Confidence
Cytoplasmic	1	39	0.63
Transmembrane Helix	40	60	0.90
Non-Cytoplasmic	61	92	0.78
Transmembrane Helix	93	115	0.72
Cytoplasmic	116	196	0.82
Transmembrane Helix	197	216	0.63
Non-Cytoplasmic	217	230	0.50
Transmembrane Helix	231	251	0.79
Cytoplasmic	252	259	0.51
Transmembrane Helix	260	280	0.94
Non-Cytoplasmic	281	281	0.59