YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11303, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNLPLLSI QEVSKHNHVK DCWVTLYQRK IYNVTGFLEE HPGGGEIILP YAGKDITEIM  60
   61 ADIQSHQHSE SAYEILDEGM LVGYLATEQE EKGLLRNKNN TPVEVKLVNK DDKDFDMYEF 120
  121 HDHLPAEEKL SIQTDFEEDS KKHRFLDLNK PLLMQLLTSN FSKEFYLDQV HRPRHYGKGS 180
  181 APLFGNFLEP ISLTPWWVIP LVWLPPNFYL FYVGFVNQSP ITALSLWVMG LFIWTLVEYC 240
  241 LHRFLFHLDY FLPDHPYAFA LHFLLHGIHH YLPMDGYRLV LPPTLFLVLA YPFYKLIFSI 300
  301 FPFYMACSGF AGGTLGYIMY DITHYVLHHT KLPKYFQTVK RLHLEHHYKN YELGFGVTSP 360
  361 FWDVVFGTEL TNTFEKRR

Type	Start	End	Confidence
Cytoplasmic	1	181	0.86
Transmembrane Helix	182	204	0.73
Non-Cytoplasmic	205	219	0.63
Transmembrane Helix	220	241	0.85
Cytoplasmic	242	250	0.68
Transmembrane Helix	251	272	0.63
Non-Cytoplasmic	273	295	0.51
Transmembrane Helix	296	320	0.79
Cytoplasmic	321	378	0.71