YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11263, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.98
Transmembrane Helix	71	93	0.91
Non-Cytoplasmic	94	100	0.75
Transmembrane Helix	101	122	0.82
Cytoplasmic	123	138	0.85
Transmembrane Helix	139	159	0.92
Non-Cytoplasmic	160	168	0.84
Transmembrane Helix	169	191	0.88
Cytoplasmic	192	208	0.77
Transmembrane Helix	209	229	0.83
Non-Cytoplasmic	230	253	0.77
Transmembrane Helix	254	273	0.80
Cytoplasmic	274	383	0.77
Transmembrane Helix	384	405	0.91
Non-Cytoplasmic	406	414	0.60
Transmembrane Helix	415	440	0.79
Cytoplasmic	441	448	0.54
Transmembrane Helix	449	466	0.42
Non-Cytoplasmic	467	514	0.68
Transmembrane Helix	515	534	0.88
Cytoplasmic	535	553	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENQQFSVS DSTENKLNYR HAAFDEENNG LLPLANKNLK PKHTLTSSTT TPNHHQNAKK  60
   61 SSHLAPQDRK AFIILVLLYV LQGVPVGLAF GSIPFILKSK LTYSQVGIFS LAAYPYSLKL 120
  121 IWSPFVDSIY SKKWGRRRSW IIPIQTISGI MLILLGTQIN DLMENPKNYL TLITMVFFIL 180
  181 ILCCATQDIA VDGWALTCLS PESLSYASTA QTIGINTGYF SSFTIFLALS SPDFANKYLR 240
  241 STPLDVGLFS LGGYLKFWGW MYLIVTGIIC LVPEDPPHLV NINRDRLAKE KGLYNSTSWQ 300
  301 DLVNVYKSMY EVLKLPNVQT FVIILLIAKL GFQVNEAGTN LKLLEKGLSK EDLSITVLID 360
  361 FPFEMIFGYY AGRWSTGKAP LRPWLWGFMG RLVAASLAQL IVYFFPKDGK VSTTYFIMII 420
  421 LQHLLGSFMS TIQFVSLCAF HTKIADPAIG GTYMTTLNTL SNYGGTWPRI FIYYLIDKIT 480
  481 INKCITDKGY IMLTSEEAKE QCTYSGGKVE TVRDGYFYTN ALCISLGIVI FFWVKKKATY 540
  541 LQSLPNTAWR VSK