YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATG27_CANAL
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILASLLTFA TAALAFDCSD KELERYNFES IKGVHSYTTL KNTPPSQTNV TWNVGICQPI  60
   61 SAIKDCPANS DICGVTSILR KDEKPVVSEV VSFKSDLQKA YESSDNGIKV IYKGANWGDV 120
  121 LVNAELNFQC DKDSQNNEFT LDQWDGTNLK LSMKTKAACI TSKEDKKKEK HDNGESWGWF 180
  181 TWIFIFLVLF LSIYIIGGAW FQYNKGNAID FQSALKEVVE NFIELLKGLP SFGKEIIEKF 240
  241 TGRSNRGEYS AV

Type	Start	End	Confidence
Signal Peptide	1	15	0.87
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	177	0.88
Transmembrane Helix	178	201	0.87
Cytoplasmic	202	252	0.86