YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46438710, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNTIYDDH YIKMNKLFKS IYTQTKLNIY EFLFAISFLV NFILGRFIHF SAPDEEVYNY  60
   61 YNNKRNILNQ WFVKKGWGWT TLVIILFYSN IIYKQYNSKA TTNTTTTNNN NNNKQGVIVQ 120
  121 TIRNAVINYI VVTIWWIFFT QWCFGLPIMD KIFVLTGGKC SIDTNSMAHF NPNHHHVHAN 180
  181 FVQKLENIWE STGITSYNCR RIKGSQWIGG HDPSGHVFLM IHSSLYLFNE MINYWPGWTY 240
  241 IKHNLSQILT SGNDNGNDNG NGNGNGTRSL SIGDKLLLLW NTPQLIIGGL IGLWWFMLLM 300
  301 TNIYFHSSLE KLVGLGFGYI GVAGLYWIPR WLL

Type	Start	End	Confidence
Cytoplasmic	1	28	0.82
Transmembrane Helix	29	50	0.84
Non-Cytoplasmic	51	75	0.74
Transmembrane Helix	76	93	0.81
Cytoplasmic	94	124	0.65
Transmembrane Helix	125	148	0.71
Non-Cytoplasmic	149	214	0.57
Transmembrane Helix	215	235	0.55
Cytoplasmic	236	276	0.73
Transmembrane Helix	277	298	0.88
Non-Cytoplasmic	299	311	0.54
Transmembrane Helix	312	329	0.94
Cytoplasmic	330	333	0.61