YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3850153, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTEVDNLP FQQQLTSFVE LAVAKATGSP ITTLFTIIFL ILSYDQLSYQ INKGSIAGPR  60
   61 FKFYPIIGPF LESLDPKFEE YKAKWDSGEL SCVSIFHKFV VIASSRDLAR KILSSPKYVK 120
  121 PCVVDVAIKI LRPTNWVFLD GKQHTDYRRS LNGLFSSKAL EIYIPVQEKY MDIYLERFCK 180
  181 YDGPREFFPE FRELLCALSL RTFCGDYITE DQIALVADNY YRVTAALELV NFPIIIPYTK 240
  241 TWYGKKIADD TMKIFENCAA MAKKHINENN GTPKCVMDEW IHLMKEAREK HSEDPDSKLL 300
  301 VREFSNREIS EAIFTFLFAS QDASSSLACW LFQIVADRPD IVAKIREEQL RVRNNNPDVR 360
  361 LSLDLINEMT YTNNVVKESL RYRPPVLMVP YVVKKSFPVT ESYTAPKGAM IIPTLYPALH 420
  421 DPEVYDEPDS FIPERWENAS GDMYKRNWLV FGTGPHVCLG KNYVLMLFTG MLGKFVMNSD 480
  481 MIHHKTDLSE EIKVFATIFP KDDLILEWKK RDPLKSL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.53
Transmembrane Helix	21	42	0.52
Non-Cytoplasmic	43	517	0.96