YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573718
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.83
Transmembrane Helix	66	89	0.78
Non-Cytoplasmic	90	96	0.76
Transmembrane Helix	97	115	0.80
Cytoplasmic	116	133	0.91
Transmembrane Helix	134	152	0.92
Non-Cytoplasmic	153	182	0.61
Transmembrane Helix	183	210	0.77
Cytoplasmic	211	216	0.43
Transmembrane Helix	217	241	0.83
Non-Cytoplasmic	242	277	0.52
Transmembrane Helix	278	296	0.52
Cytoplasmic	297	316	0.90
Transmembrane Helix	317	335	0.95
Non-Cytoplasmic	336	342	0.78
Transmembrane Helix	343	363	0.84
Cytoplasmic	364	373	0.74
Transmembrane Helix	374	396	0.90
Non-Cytoplasmic	397	584	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRYNKVLDA TLIALVSFHL VISPFTKVEE SFNIQAIHDI LKFGIFPLET IDNYDHKQFP  60
   61 GVVPRTFLGS LVVAGLAKPI LLLSSAFGFE IEGYELQKLV RAVLGLVNVL MLIRLRDSIN 120
  121 KITFSDKKSK RKGLIGFWYT TLLLSQFHLL YYSSRTLPNF IALPLVNFSL SKIIQGDLSG 180
  181 LTWLAFTGIV FRLEVGLFGL IIAIVSSLGF GQSNIFGNII YLAMGTLLGG FTSFCIDSYF 240
  241 WGRPLIPEID SFIFNIVQGK STEWGTEPWD TYFKKYLFQL FRPPVILMLA IPGLINDPAN 300
  301 DGTKFGDKKS VPHPARYSLR ILFISSILFI AAMSFQPHKE WRFIVYTIPI FTLQAANGVT 360
  361 NICQKWGLSV LNKVLIFIIG ANVIISSLLS LHMGYISSFN YPGGDALQFT NNYILENYKN 420
  421 ETVSVHMDVP ACMTGITRFG ELDGKFASYD KSEQDFDITN YDIIITHNEV PNWELLHSSR 480
  481 VFDGISLRMF IQIFMAQRKD RSTIFNITKL ILSEFAQGEF GTVHDMLRST ITTVEYLNVY 540
  541 KNVNKNPHMV QGVPETKIID QEIDPEEIRQ DVNEQIDKFE SAVL