YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573726, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPNKWLIA YNSISASLWS IVLFNTVFLS LTLGQPYVFE KTNKTTTAIQ TLAVVEIVNS  60
   61 LLGLVKSPLF TTVTQVFSRL LIVWGIHQYL PDSPANYHWC YITLCLSWSI TEIIRYSYYA 120
  121 SNLTGQVPFW LTWLRYTTFY VLYPTGVFSE VCSVILSLNE AGFYYGWILK IILVVYIPGF 180
  181 YMLYTYMIKQ RKKVLNKKNQ

Type	Start	End	Confidence
Cytoplasmic	1	7	0.69
Transmembrane Helix	8	33	0.78
Non-Cytoplasmic	34	96	0.52
Transmembrane Helix	97	119	0.75
Cytoplasmic	120	135	0.77
Transmembrane Helix	136	158	0.75
Non-Cytoplasmic	159	165	0.80
Transmembrane Helix	166	188	0.90
Cytoplasmic	189	200	0.97