YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIM54_CANAL
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDANEVKPK KGWSNPALRM MGIPRISLPS RNWMIFWTVV TTIGGGIAYD KYEQKQMRKK  60
   61 WMDAVKQFGE VSYGANEIPR KLSIFIAPPP NDFLDESLKL FRKFIKPVLN AGVVDFEIFS 120
  121 ESRQGDIRAS VAEKIRELRR KQLVEETPKK NESNGNQDND EEELKSRSDL YKAKDVLGLY 180
  181 KVFPADINVK SEDAIDDSSA GGIICVGRGA YKEYLSGVHE GLLGPLEKPQ SVIDEETKLA 240
  241 EEKKKEKEEN PDKDDDNDEE QSNLKPVPLR YIQPEDYANA QLAPELDLST VVKDDKGVPV 300
  301 FFEQPVYTFP LPNLVGFTNI PRKIYRYFTK RFLVDDFGER TATIVNNKSR PFVYKDVLMA 360
  361 KEEEMDWPKK WVEKGKERNS EWVQELEHDE RVTSRMKVFE

Type	Start	End	Confidence
Cytoplasmic	1	28	0.60
Transmembrane Helix	29	49	0.64
Non-Cytoplasmic	50	400	0.89