YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8545, orf1...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDSNFFVDF MMGGVSAAVS KTAAAPIERV KLLIQNQDEM IKQGRLEKRY TGIVDCFKRT  60
   61 AADEGVVSFW RGNTANVIRY FPTQALNFAF KDKFKAMFGF KKDENYWKWF AGNLASGGLA 120
  121 GATSLAFVYS LDYARTRLAN DAKSSKGDGK REFNGLVDVY KKTLASDGIA GLYRGFGPSV 180
  181 IGIVVYRGLY FGLYDSLKPV VLVGPLEGSF LASFLLGWAV TTGASTASYP LDTVRRRMMM 240
  241 TSGQAVKYDG ALDCFRKVVA AEGVGSLFKG CGANILRGVA GAGVISLYDQ LQVILFGKKF 300
  301 K

Type	Start	End	Confidence
Cytoplasmic	1	169	0.64
Transmembrane Helix	170	190	0.72
Non-Cytoplasmic	191	209	0.75
Transmembrane Helix	210	231	0.87
Cytoplasmic	232	301	0.78