YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3406, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDNLYLTTY EAALAVVATA MKKARLRIDV LVINSFMGGM LFTTGGMLYD LIRAGFSGIN  60
   61 ETNPGVISLL QGICYPIGLF YVVILGVDLF NSNILFFSTA LCRGAVSFLD LFISWFVSWW 120
  121 FNLVGNIFVC YIFCYYSDVV RTQLMVVGSV EVAVQKAEST FVETLLKATA GNFYVCLAIF 180
  181 LQLMAKPLHV KFLMMLLPVF TFVAMGFTHS VADMFLVTMG LINGAPISVG KAAWKVFLPG 240
  241 AIGNIIGGSF FGVVITWYLH IYVVERDRAA LNLPQYELRD EQPELNQDSR VVRKKSPRME 300
  301 DEVVHTNKFD DSEESEEIQA PEDFYPTPVY DETSIQSYRL THRKTRDSIS SLRSTRRSPK 360
  361 NVFPVYGMGA PLKRERTIAG EVSTPAEPMD EKLEEEAEYI GTRLRKAISN RSKVSDLEAN 420
  421 KSPSNHGSRQ PTPRSSFSRR SSNVGIIKSS EGPDPTDSNI DLADIRE

Type	Start	End	Confidence
Cytoplasmic	1	29	0.95
Transmembrane Helix	30	49	0.95
Non-Cytoplasmic	50	66	0.84
Transmembrane Helix	67	97	0.72
Cytoplasmic	98	100	0.42
Transmembrane Helix	101	135	0.64
Non-Cytoplasmic	136	164	0.72
Transmembrane Helix	165	185	0.69
Cytoplasmic	186	191	0.69
Transmembrane Helix	192	212	0.84
Non-Cytoplasmic	213	236	0.68
Transmembrane Helix	237	261	0.86
Cytoplasmic	262	467	0.86