YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68478685, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAPPPAPIV LDSQSVSGIT GSISIACWII VFAPQIYENF KRKSSEGLSL TFIVLWLAGD  60
   61 VFNVLGAVLQ GVLPTMIILA VYYTLADIVL LWQCLAYGDG KNPDLIHLSP ANPLNEDVLE 120
  121 TAMSNEERHN RRRNQGNTTE DLESSTTSVD SSISKSSSSQ FQSFLINTLM VTLVIASGVI 180
  181 GWYISYIKES KHHSKHPGKH NPEELIFDPL AQIFGWLCAF FYLGSRIPQI VLNYERKSCD 240
  241 GISFMFFLFA CLGNLTYVIS ILSIDMSWNY LWVNSSWLAG SLGTLGLDFT IFIQFFLYNE 300
  301 NKDDEFSEYE SSSETESESL LTSSDRSYGT A

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.81
Transmembrane Helix	16	37	0.86
Cytoplasmic	38	47	0.82
Transmembrane Helix	48	69	0.86
Non-Cytoplasmic	70	75	0.60
Transmembrane Helix	76	96	0.80
Cytoplasmic	97	163	0.90
Transmembrane Helix	164	184	0.96
Non-Cytoplasmic	185	204	0.86
Transmembrane Helix	205	225	0.84
Cytoplasmic	226	241	0.77
Transmembrane Helix	242	264	0.89
Non-Cytoplasmic	265	275	0.77
Transmembrane Helix	276	298	0.86
Cytoplasmic	299	331	0.92