YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8848, orf1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.91
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	209	0.97
Transmembrane Helix	210	233	0.85
Cytoplasmic	234	287	0.92
Transmembrane Helix	288	309	0.89
Non-Cytoplasmic	310	329	0.84
Transmembrane Helix	330	351	0.85
Cytoplasmic	352	366	0.84
Transmembrane Helix	367	386	0.84
Non-Cytoplasmic	387	401	0.87
Transmembrane Helix	402	423	0.94
Cytoplasmic	424	431	0.80
Transmembrane Helix	432	451	0.96
Non-Cytoplasmic	452	458	0.82
Transmembrane Helix	459	475	0.82
Cytoplasmic	476	760	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIQQLIVFL FAVVLIDART PKRYSELDIV MSTCTTFIGK YGTVCTSTGK RSTNWNCYCK  60
   61 TDAGFGTISD CLVRGFNNNT NIISKFTESC NMTESKFHAK YDKIQAEFKT NGTEYAKMTT 120
  121 KSSSGSKTSA SASKSSKSTG SSNASKSSTN AHGSNSSTSS TSSSSSKSGK GNSGTSTTET 180
  181 ITTPLLIDYK KFTPYKDAYQ MSNNNFNLSI NYGSGLLGYW AGILAIAIFA NMIKKMFPSL 240
  241 TNYLSGSISN LFRKHLFLPA TFRKKKAQEF SIGVYGFFDG LIPTRLETII VVIFVVLTGL 300
  301 FSALHIHHVK DNPQYATKNA ELGHLIADRT GILGTFLIPL LILFGGRNNF LQWLTGWDFA 360
  361 TFIMYHRWIS RVDVLLIIVH AITFSVSDKA TGKYNTRMKR DFMIWGTVST IGGGFILFQA 420
  421 MLFFRRKCYE VFFLIHIVLV VFFVVGGYYH LESQGYGDFM WAAIAVWAFD RVVRLGRIFF 480
  481 FGARKATVSI KGDDTLKIEV PKPKYWKSVA GGHAFIHFLK PTLFLQSHPF TFTTTESNDK 540
  541 IVLYAKIKNG ITSNIAKYLS PLPGNTATIR VLVEGPYGEP SSAGRNCKNV VFVAGGNGIP 600
  601 GIYSECVDLA KKSKNQSIKL IWIIRHWKSL SWFTEELEYL KKTNVQSTIY VTQPQDCSGL 660
  661 ECFEHDVSFE KKSDEKDSVE SSQYSLISNI KQGLSHVEFI EGRPDISTQV EQEVKQADGA 720
  721 IGFVTCGHPA MVDELRFAVT QNLNVSKHRV EYHEQLQTWA