YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7313
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	105	0.98
Transmembrane Helix	106	127	0.89
Non-Cytoplasmic	128	135	0.77
Transmembrane Helix	136	162	0.83
Cytoplasmic	163	176	0.91
Transmembrane Helix	177	197	0.95
Non-Cytoplasmic	198	206	0.82
Transmembrane Helix	207	229	0.92
Cytoplasmic	230	241	0.90
Transmembrane Helix	242	263	0.90
Non-Cytoplasmic	264	276	0.80
Transmembrane Helix	277	299	0.87
Cytoplasmic	300	310	0.78
Transmembrane Helix	311	332	0.88
Non-Cytoplasmic	333	353	0.87
Transmembrane Helix	354	378	0.84
Cytoplasmic	379	404	0.90
Transmembrane Helix	405	424	0.89
Non-Cytoplasmic	425	439	0.81
Transmembrane Helix	440	462	0.94
Cytoplasmic	463	481	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSHNDNK IPPEKTTTPP LSSSNEDIYN PADSSNVLSS NQTLVSTNNN NNNNQNNNQN  60
   61 NNQNNDGKDT MDHLSYLSTI DSKRREQSYL KSFYQRFIIE DVVKNFTPAY FVSVMGTGIS 120
  121 SSLLYNFPFP AYWLQICGYV MFGLTCTFFI GNIILLIMSC AYYPNRFRDY HVDPSRAVFM 180
  181 GAFSMGYITI VNFIALITKG EHIYFVWTLW WLAVFSAMYT SFLIVYLSFM SKLNESDVEA 240
  241 KLNATLLLPI VAITVVSSSG HSIELDLPHV HQTVLTMIVS FMLWSLSISM AFMVMTLYMG 300
  301 RLIIHKIPPT NLIMTSFLPV GFLGQSSYSI YLFGNNLNKF IPEELLYGKI SLCLSGFVSV 360
  361 FLLSFGYFMC FVAVTSVLSK IRPFAKNPNP SHTNRFGLLK LEKSFWSMTF PMGTMSLSNT 420
  421 EIGHGGVGNY PLLTFKVMGS IFAAACIFIT VGCSIGVVVY SFKKLREDMT NKNKYRNESM 480
  481 V