YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7282
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSQPRTKP WEVSQGKSAA STTEPLTSNI PPSSLSNSST TATAQGQPQS QIQPPSVPEL  60
   61 PTSLSSDLNT MAESSPYGGY GNSSMNRYGT TGGYGSSMYG GGYGSSMYGN SMYGGGYGSS 120
  121 MYGGGYGGYG SGYGGYGSYG SGMYGGGMYG NNPSMMGQGG LGEGTQATFQ LIESIIGAVG 180
  181 GFAQMLEATY MATHSSFFTM VNLAEQFGNL KNALGSILGI FALIKFVKKI FYKITGRVYN 240
  241 YGINASEFTK FEKNQKKLEE NLRRNQSGQK PRISLKPLVL FLVAAVGFPY LLSKAIKLIE 300
  301 EKNQRPPPVP SKIQFARALY EFNPQNPQVE APLEPKEIVA ILDSRDNWLR IRKRSGTMGW 360
  361 VPSNYVEVID T

Type	Start	End	Confidence
Cytoplasmic	1	91	0.91
Transmembrane Helix	92	112	0.58
Non-Cytoplasmic	113	128	0.63
Transmembrane Helix	129	150	0.66
Cytoplasmic	151	168	0.68
Transmembrane Helix	169	188	0.78
Non-Cytoplasmic	189	206	0.77
Transmembrane Helix	207	227	0.77
Cytoplasmic	228	272	0.90
Transmembrane Helix	273	292	0.82
Non-Cytoplasmic	293	371	0.83