YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.12745, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.96
Transmembrane Helix	54	74	0.90
Non-Cytoplasmic	75	81	0.78
Transmembrane Helix	82	103	0.92
Cytoplasmic	104	124	0.87
Transmembrane Helix	125	143	0.90
Non-Cytoplasmic	144	166	0.82
Transmembrane Helix	167	184	0.94
Cytoplasmic	185	193	0.74
Transmembrane Helix	194	217	0.84
Non-Cytoplasmic	218	237	0.90
Transmembrane Helix	238	257	0.92
Cytoplasmic	258	274	0.81
Transmembrane Helix	275	297	0.87
Non-Cytoplasmic	298	326	0.91
Transmembrane Helix	327	346	0.92
Cytoplasmic	347	371	0.86
Transmembrane Helix	372	393	0.87
Non-Cytoplasmic	394	404	0.76
Transmembrane Helix	405	426	0.92
Cytoplasmic	427	440	0.90
Transmembrane Helix	441	462	0.90
Non-Cytoplasmic	463	475	0.93
Transmembrane Helix	476	497	0.93
Cytoplasmic	498	553	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFTDLYKPS ESPEKRSDTN TDNLSEYSTD HEIEAGVQLD QNVKQIGIIS ATFLIINRCI  60
   61 GAGIFATGST IYTLSGSVGT SLILWVAGTL IAFAGLLVYM EFGSVLTRNG SEVVYLQHIY 120
  121 KSPRFLVISS YAVYALTMPW TAGNSVVTGE YILTAAGKEV TQWNSRGIAL AVVTFAFLIN 180
  181 AINAKAGLFM ANTLGSFKIV IILFIIITGW VGLGNGIKTG HFEPTHNFHN AFEGQTPTGY 240
  241 GICVALYNVI WSFVGYSNAS YALGEVKNPM KVLKVSAPLA LLGIAIAYML VNIAYYAVVP 300
  301 VDVIAASKRI LVADFFYYAF GSKASKAAAV FVALSAWGNV MSVIFSQGRI ITQLGRSGVI 360
  361 PFSRFFGSSK PFNTPFTGLL EHWIIGVIFI CAVPPGDSYN FILNLVSYPL NVINTLLGAG 420
  421 LVWIYIRKYQ GKYEWNPKIK ATFPVAVFFF LSSLYLVAAP YIPPSEGQSV YEKLPYWLHA 480
  481 VVTWGVFGLG GIYWVIWTQL LPRFGGYKLV EKEVLGEDGF WRNKIYKVSK DSTEEEIQQQ 540
  541 VEAAVEAEGN KLK