YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6445, orf1...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKIYINSM SYLYFSLSNS PKVSKLLYTM SDEEADVLYE VRDRTAIITF NIPSKLNALN  60
   61 GEQYLKLGKF MERANEEEGT VMTLIQSTGR FFSAGANFAD NGLMDVDPQL LFTHEYWLGK 120
  121 FVARNVWLTN LFNDHKKILV AAVNGPSIGL STGLLMLVDL VYVHDLSKFY LLAPFANLGL 180
  181 VAEGAASATL FARLGWSKAS EALLLAKPIS GADCYNVGLI NKHYDGKFKS TEEFNQQVYK 240
  241 EVTDAFENLH EDSILQNKQL LKLNRDQYIN HANSQEVMRG LGKWLEGVPQ TRFVQLANKD 300
  301 VKHKI

Type	Start	End	Confidence
Cytoplasmic	1	137	0.87
Transmembrane Helix	138	162	0.75
Non-Cytoplasmic	163	170	0.85
Transmembrane Helix	171	192	0.79
Cytoplasmic	193	305	0.85