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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NTE1_CANAL
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPEFEDSIP LVHSDNRTTT IYSVYIIISD IFSFVQWLLF KVLNLIIIDS PAFVLRLLSK  60
   61 NFEINLHLSS ILATLIGVSV VTYLVIRYKF LTGYSHSNDQ KEGAGKKGIH PASSKVFVGK 120
  121 SKQDKKPSNY LDEFLLAIKV FGYLDKAVFH ELTKSMTTQK LSHEEILCLD ESLGFSIVVE 180
  181 GVAQVYTKKS KENSSKYKQR YFEEIEEERD EFLILGDKQY QLLNEVKSGA PLSSLFSTLD 240
  241 LFRPRNKNEE MALTPNDEDG NSVVALNMDY LSKSEPATDS KLSNSDDDEN GQDYPEIIVR 300
  301 PKKSHNNGTI TIAIIPHTAF ERVQSKYPKA TSHIVTMVLT RLYKVTMSTV QNYLGLTSEI 360
  361 LKSEIKLNEE NATSLPRYFV DGLLERLNKK EEAEAEAENL PKKLKHHHRN QLQRTTSRYV 420
  421 SLDSKVKSNH PGDLLSSVPI SRSEFQKKVL PKSSTTSLSD GDNKRMNFTD EMEETEENSL 480
  481 RVAIIENIFK MVGIEETNGI VERTGYFQSL SSSTSSSIVG LDSLNQSIMS GATTPTTKRS 540
  541 HPVFNNQGSL MNTINLAELR KPSTAENSTL PKLSGKKRLL SDMNIKDAFA KSLEIKYIGP 600
  601 DSTIVSQNSA ITGLYYVIDG SLEIYNRSAD VSAPNRYIYT VESGGIAGYL TSVVGFRSMV 660
  661 TIKTPKKTGA VVAYIPKNDY NKLLDKYYFL QLPVALKLKN LLSKQILTID YALEWCHIPA 720
  721 GEVLCSQGDL ANGFHVVLSG RFRVVRSTNK NTEKEDVEVL GEYGHGESIG EVEVLTASRR 780
  781 SNTLIAVRDS ETARIPRSLF EMLSNENPSI MVSVSRLVAS KVLASQYQPR ERNFITSTTS 840
  841 QESFTSANYK TITILPTVSG LPVRQFAEKL VQALRQIGRN VIALDQASIL THLGRHAFDE 900
  901 SLARLKLSGY FAYLEEEYET IVYICDTPVQ SNWTSTCISQ GDCILLLADA EDDSTTIGEY 960
  961 EQLLVKLKTT ARTDLCLLHQ DKVVRAGSTS PWLKNRIWVQ GHHHIQMKFE QGANVLPHKK1020
 1021 SFISDLAAKL SQNKAIKSTF EATKQHIKWY VKENDQSKVL KIYKDDFMRL ARILSNEAVG1080
 1081 LVLGGGGSRG ISHVGVVTSL ERHGIPVDII GGTSIGSFVG GLYAKEYNIV SIYAMAKKFS1140
 1141 KRISSVWRML FDLTYPVTSY ITGYEFNRGI WKVFGFAEIE DFWIKYFCNS ANITNSTMDI1200
 1201 HEKGYAWRFI RASMSLAGLL PPIAFNGCML LDGGYLDNLP VNEMKKRGVK HIIAVDVGSV1260
 1261 DDRTPMNYGD TLSGFWVLLN RWNPFSSHPN IPTMMDIQMR LTYVSSVNAL EEAKRTPGVY1320
 1321 YLRPPIDPYA TLDFGKFDEI YKVGLKYADD LFADWKSKGK FPRIAGLVEK KKDGEEKKIL1380
 1381 YRRNSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle