YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13731, orf...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVYWINNLC EIIQCICWRR RRQGRTFFPS YFFFSLSLFF QSHCSSVKGW LFCAEPCGSV  60
   61 NARHRVIFGE TKRILKNRGL NSTTDWLDDK MQSVFIRTFA TSRIEFQRYQ PRFVNTIKET 120
  121 VKSAQEKSYS ITRPLGLSKP VLLNHKLSDT YSLSNIYEEL FGQKSKERRQ KQLDYDLKHS 180
  181 PIYEVKSFEN TKGKIFTPPV SYFRQDKSLY FPDFIAKTLA GNQRSLYDSL DNRLSIVKLF 240
  241 SSVAGEQCTR SYFKVENKDY YSQDYDTFVE EYPHTQILDV NMPQSWIKGF VTNLSTGNLR 300
  301 KTLKPASRYE NYFILPGHIM SAEIREQLYC DNQCSGYIYI VDSMGKIRWA TSGYATPEDL 360
  361 KLMWKVVKGV QREMTK

Type	Start	End	Confidence
Cytoplasmic	1	26	0.55
Transmembrane Helix	27	42	0.56
Non-Cytoplasmic	43	376	0.99