YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7441
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGEEYSNIS LSGIASESTP IKRKPQQASF TEYVTVNETT VNNNSTILPT NEKVQNQQQQ  60
   61 SSKDSDELDS IIDTHPELKI ASRENGEFNP VNVAYTMFTP QKQQNPEIIL TPSNKPLQQQ 120
  121 ESKDKDLTTT STQQVQNILL NPMTPYTLTL YFQLFSNMIM ASIVIYMAYL AYTTIRQDIN 180
  181 FKIQRMTLDL LDEISQCSKQ YTLNKCHLST RPPAIEQECN YLDKCQNQDP SLISRSNLTS 240
  241 EILAEITNSF FNKLNYKSIS IVLIFLVINL VSNYYIIGNF QYNEINRLKK LEFNSNPESK 300
  301 LDTKIDLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	149	0.60
Transmembrane Helix	150	173	0.77
Cytoplasmic	174	257	0.57
Transmembrane Helix	258	278	0.75
Non-Cytoplasmic	279	308	0.65