YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7411
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTERKLII NTAGGAAANM KQKEIPSTKN DAQKVSTLGG FLAGGVAACM AVTFTNPIEL  60
   61 IKTRMQLQGE LVKKSKDAVV LYKNPLQAFA VIYRNEGIRG LQQGLACGYY YQLALNGCRI 120
  121 GFYEPSRFYL SKAFAPSHIM PDGQVKQSLS INVLAGFVSG ASGAVLASPM FLIKTRMQSF 180
  181 SASNTGGAAV GQQTFYKNTW DGFSQIYHSE GIKGLYRGVD AAILRTGAGS AAQLPTYYLT 240
  241 KSFLLKHGLA KENSFSLNFI SSIMAGLGVA IVMNPWDVVL TRMYNQKGNL YSGPIDCFKK 300
  301 TIAAEGAMAL YKGFWAQLFR IGPHTILTLL FMEQCMKGMV SIEKKLRSFN

Type	Start	End	Confidence
Cytoplasmic	1	34	0.66
Transmembrane Helix	35	55	0.69
Non-Cytoplasmic	56	150	0.74
Transmembrane Helix	151	173	0.87
Cytoplasmic	174	254	0.81
Transmembrane Helix	255	274	0.90
Non-Cytoplasmic	275	315	0.86
Transmembrane Helix	316	336	0.68
Cytoplasmic	337	350	0.78