YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERV25_CANAL
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSLITYIAL VFSLFVSSAI GLHLEVPALP NPQPVCIRDF VQENQMVVVN IKTDGSKGDG  60
   61 QRLDLKVTDS LGNEYRNKKD VVGHANVAFT SQHNAAIDIC LTNYLDNKWS KHQQTVRSVE 120
  121 LDIESGAAAR DWNALQASEK LKPVEVELKR IESITEEIVE ELRYLKAREE RMRDTNESTN 180
  181 SRVKWFSIVV IASLVGFGVW QIQYLRHYFK VKHII

Type	Start	End	Confidence
Signal Peptide	1	21	0.88
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	184	0.96
Transmembrane Helix	185	204	0.84
Cytoplasmic	205	215	0.79